Factsheet for PGSC0003DMT400092434

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 2
peroxisome 2
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	79.63	79.34
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	76.67	76.1
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	75.93	75.65
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	64.07	75.22
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	75.19	75.19
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	37.41	74.81
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	25.19	74.73
PGSC0003DMT400088158	Potato	cytosol	70.37	73.93
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	74.07	73.8
PGSC0003DMT400072205	Potato	cytosol	71.48	66.55
CDY07809	Canola	plastid	34.81	63.51
KRH71588	Soybean	cytosol	65.93	63.12
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	25.93	63.06
PGSC0003DMT400062814	Potato	cytosol	23.33	63.0
Bra024488.1-P	Field mustard	plastid	34.44	62.84
CDY29207	Canola	plastid	34.44	62.84
KRH71621	Soybean	cytosol	65.56	62.77
PGSC0003DMT400018472	Potato	cytosol	62.96	61.59
Bra014762.1-P	Field mustard	cytosol	63.7	61.43
CDY03343	Canola	cytosol, nucleus, peroxisome	63.7	61.43
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	64.07	61.35
AT3G55290.1	Thale cress	cytosol	63.33	61.07
Zm00001d031453_P001	Maize	cytosol	63.33	61.07
Bra040871.1-P	Field mustard	cytosol	62.59	60.79
CDY29203	Canola	cytosol	62.59	60.79
Bra002097.1-P	Field mustard	cytosol	62.59	60.79
CDX73333	Canola	cytosol, nucleus, peroxisome	62.59	60.36
AT1G63380.2	Thale cress	cytosol	64.07	60.28
Bra036706.1-P	Field mustard	cytosol	64.07	60.28
CDY48725	Canola	cytosol, peroxisome, plastid	64.07	60.28
AT3G55310.1	Thale cress	cytosol	62.22	60.22
TraesCS7D01G245700.1	Wheat	cytosol	62.59	59.72
CDY07814	Canola	cytosol	61.48	59.71
CDX76107	Canola	cytosol, nucleus, peroxisome	61.85	59.64
CDY44938	Canola	cytosol, peroxisome, plastid	62.59	59.51
EES14264	Sorghum	cytosol, plastid	61.48	59.5
TraesCS7A01G246900.1	Wheat	plastid	62.22	59.36
Bra014757.1-P	Field mustard	cytosol	61.48	59.29
CDY65313	Canola	cytosol, nucleus, peroxisome	61.85	59.22
Os08t0510400-01	Rice	plastid	62.22	59.15
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	62.59	58.68
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	60.37	58.42
TraesCS7B01G144400.1	Wheat	cytosol	60.74	57.95
TraesCS7A01G427800.1	Wheat	mitochondrion	59.63	57.71
Bra014761.1-P	Field mustard	cytosol	53.7	57.09
TraesCS2D01G531000.1	Wheat	plastid	58.89	56.99
Bra014760.1-P	Field mustard	plastid	47.78	56.09
CDY02920	Canola	cytosol	48.52	55.27
PGSC0003DMT400021571	Potato	cytosol	34.81	54.02
CDY40209	Canola	peroxisome	62.22	53.85
HORVU7Hr1G050760.2	Barley	vacuole	61.85	53.53
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	24.44	53.23
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	60.74	52.56
HORVU2Hr1G116450.1	Barley	plastid	58.89	50.16
GSMUA_Achr3P03770_001	Banana	cytosol	10.0	47.37
KRH76339	Soybean	cytosol	19.63	46.9
Bra007151.1-P	Field mustard	cytosol	62.59	37.72
CDX73391	Canola	cytosol	62.96	36.25
CDX91138	Canola	cytosol, plastid	18.52	31.06
PGSC0003DMT400015737	Potato	cytosol	25.93	26.32

Protein Annotations

EntrezGene:102596638	Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M1DPT2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
EnsemblPlantsGene:PGSC0003DMG400042005	PGSC:PGSC0003DMG400042005	EnsemblPlants:PGSC0003DMT400092434	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR44375	PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000295F715
RefSeq:XP_006365797.1	SEG:seg	:	:	:	:

Description

Short-chain type alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400042005]

Coordinates

chr12:+:60896642..60897716

Molecular Weight (calculated)

29412.7 Da

IEP (calculated)

9.161

GRAVY (calculated)

0.114

Length

270 amino acids

Sequence
(BLAST)

001: MEPWKDLTGK VVMVTGASSG IGVEFCLDLT KAGCRIIAAA RRVDRLTNLC NQINSEGPAR RAFALELDVM ANGATIEAAV KIAWDAFGRI DVLVNNAGVR
101: GSVSSSLKLS EEEWEHTFRT NLRGAWLVSK YVCRHMRDAK QGGGSVINIT SIAALNRVIT PGTLAYASSK MALDMVTKIM ALELGVDKIR VNSISPGIFK
201: SEITESLFQQ KWLHKFLYKT LPQRYIGTTD PALTSVIRYL IHDSSEYVTG NIFIVDGGGT LPGVPIFSSL

Best Arabidopsis Sequence Match ( AT1G63380.3 )
(BLAST)

001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AVALELDVSS EADTIRKAVK EAWETFGKID
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP

Arabidopsis Description

F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.