Factsheet for PGSC0003DMT400088158

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
peroxisome 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	40.08	76.3
PGSC0003DMT400062814	Potato	cytosol	29.57	76.0
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	66.93	74.78
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	74.71	70.59
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	73.93	70.37
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	71.98	68.52
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	71.98	68.27
CDY29207	Canola	plastid	39.3	68.24
Bra024488.1-P	Field mustard	plastid	39.3	68.24
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	69.26	65.68
CDY07809	Canola	plastid	37.74	65.54
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	22.96	64.84
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	68.09	64.58
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	26.85	62.16
PGSC0003DMT400072205	Potato	cytosol	68.87	61.03
Bra040871.1-P	Field mustard	cytosol	64.98	60.07
CDY29203	Canola	cytosol	64.98	60.07
AT3G55290.1	Thale cress	cytosol	64.98	59.64
CDY07814	Canola	cytosol	64.2	59.35
KRH71588	Soybean	cytosol	64.59	58.87
AT3G55310.1	Thale cress	cytosol	63.81	58.78
PGSC0003DMT400018472	Potato	cytosol	63.03	58.7
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	65.76	58.68
Bra014762.1-P	Field mustard	cytosol	63.81	58.57
Bra014760.1-P	Field mustard	plastid	52.14	58.26
Os08t0510400-01	Rice	plastid	64.2	58.1
CDY03343	Canola	cytosol, nucleus, peroxisome	63.03	57.86
CDX76107	Canola	cytosol, nucleus, peroxisome	63.03	57.86
CDX73333	Canola	cytosol, nucleus, peroxisome	63.03	57.86
KRH71621	Soybean	cytosol	63.42	57.8
Bra014757.1-P	Field mustard	cytosol	62.65	57.5
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	63.03	57.45
Bra002097.1-P	Field mustard	cytosol	61.87	57.19
Bra036706.1-P	Field mustard	cytosol	63.81	57.14
CDY48725	Canola	cytosol, peroxisome, plastid	63.81	57.14
CDY44938	Canola	cytosol, peroxisome, plastid	63.03	57.04
EES14264	Sorghum	cytosol, plastid	61.87	56.99
TraesCS7D01G245700.1	Wheat	cytosol	62.65	56.89
CDY65313	Canola	cytosol, nucleus, peroxisome	62.26	56.74
TraesCS7A01G246900.1	Wheat	plastid	62.26	56.54
Bra014761.1-P	Field mustard	cytosol	55.64	56.3
AT1G63380.2	Thale cress	cytosol	62.65	56.1
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	60.7	55.91
TraesCS7B01G144400.1	Wheat	cytosol	61.09	55.48
Zm00001d031453_P001	Maize	cytosol	60.31	55.36
TraesCS7A01G427800.1	Wheat	mitochondrion	59.92	55.2
TraesCS2D01G531000.1	Wheat	plastid	59.14	54.48
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	65.76	54.17
HORVU7Hr1G050760.2	Barley	vacuole	62.65	51.6
CDY40209	Canola	peroxisome	62.26	51.28
CDY02920	Canola	cytosol	46.3	50.21
GSMUA_Achr3P03770_001	Banana	cytosol	10.89	49.12
PGSC0003DMT400021571	Potato	cytosol	33.07	48.85
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	23.35	48.39
HORVU2Hr1G116450.1	Barley	plastid	58.37	47.32
KRH76339	Soybean	cytosol	19.07	43.36
Bra007151.1-P	Field mustard	cytosol	62.65	35.94
CDX73391	Canola	cytosol	63.42	34.75
PGSC0003DMT400015737	Potato	cytosol	28.79	27.82
CDX91138	Canola	cytosol, plastid	16.73	26.71

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:M1DFC8	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	EnsemblPlantsGene:PGSC0003DMG400037729
PGSC:PGSC0003DMG400037729	EnsemblPlants:PGSC0003DMT400088158	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375
PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00029513A8	SEG:seg

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400037729]

Coordinates

chr12:-:60926766..60930734

Molecular Weight (calculated)

27965.7 Da

IEP (calculated)

8.732

GRAVY (calculated)

0.114

Length

257 amino acids

Sequence
(BLAST)

001: MVTGASSGIG REICLDLAKA GCSIIASARR FDRLKSLCDA INSEGRQCAF ALELDITADG FTVEAVVQRA WDAFGRIDAL INNAGLRGSV SSALELSEEE
101: WEQTFKTNLR GAWLLSKYVC RRMRNAKQGG GSVINISSVS GLNRVLIPGG FAYASSKMAL DMLTRMMALE LGVYKIRVNS IAPGIFKSEI TERLIQKERF
201: HNFVFRTFPL RDLGTTDPAI TSVVRYLIHS SSEYVSGNIF IVDSGGSSTG VPIFSSL

Best Arabidopsis Sequence Match ( AT2G17845.1 )
(BLAST)

001: MSFWFRDKSL YVMGISFSTK EHTKRNNMSN HQTVREILLL LYLTCELKDK VVLVTGASSG IGREVCLDLA KAGCKIIAAA RRVDRLKSLC SEINRFEYSA
101: GIQAEALELD VSSDAATVQK AVKKAWEIFG KIDALINNAG FRGNVKSSLD LSEDEWDKVF KTNLTGTWLV SKYVCILMRD AKRGGGSVIN ISSVSWLHRG
201: QVPGGVAYAC SKGGVDTMTR MMALELGVYK IRVNSIAPGL LKSEITQGLM QKEWLKTVIE RTVPLKVQQT VDPGLTSLLR YLVHDSSKYI SGNTYIVDAG
301: ASLVGLPIFS SL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IPI3]
SUBAcon: [golgi,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.