Factsheet for PGSC0003DMT400021572

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021571	Potato	cytosol	94.35	67.24
Solyc10g078360.1.1	Tomato	cytosol	89.52	38.14
PGSC0003DMT400018472	Potato	cytosol	82.26	36.96
VIT_08s0040g01190.t01	Wine grape	cytosol	60.48	26.22
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	48.39	26.09
EES14264	Sorghum	cytosol, plastid	57.26	25.45
TraesCS7A01G427800.1	Wheat	mitochondrion	57.26	25.45
VIT_08s0040g01200.t01	Wine grape	cytosol	58.06	25.17
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	54.84	25.09
TraesCS7D01G245700.1	Wheat	cytosol	56.45	24.73
TraesCS7A01G246900.1	Wheat	plastid	56.45	24.73
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	54.03	24.72
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	54.03	24.72
Zm00001d031453_P001	Maize	cytosol	55.65	24.64
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	53.23	24.44
TraesCS2D01G531000.1	Wheat	plastid	54.84	24.37
Os08t0510400-01	Rice	plastid	55.65	24.3
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	52.42	24.07
TraesCS7B01G144400.1	Wheat	cytosol	54.84	24.03
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	54.03	24.01
PGSC0003DMT400072205	Potato	cytosol	55.65	23.79
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	51.61	23.53
PGSC0003DMT400088158	Potato	cytosol	48.39	23.35
HORVU7Hr1G050760.2	Barley	vacuole	58.06	23.08
HORVU2Hr1G116450.1	Barley	plastid	54.03	21.14
PGSC0003DMT400015737	Potato	cytosol	21.77	10.15
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	0.0	0.0
PGSC0003DMT400062814	Potato	cytosol	0.0	0.0
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	0.0	0.0
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400021572	EnsemblPlantsGene:PGSC0003DMG400008364	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR44375
PANTHER:PTHR44375:SF2	PFAM:PF00106	PGSC:PGSC0003DMG400008364	PRINTS:PR00081	SUPFAM:SSF51735	UniParc:UPI0002958281
UniProt:M1AFC6	MapMan:35.2	:	:	:	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400008364]

Coordinates

chr10:+:59322974..59323420

Molecular Weight (calculated)

13306.9 Da

IEP (calculated)

5.137

GRAVY (calculated)

0.010

Length

124 amino acids

Sequence
(BLAST)

001: MTTQVPKYVE PRTQEMNNVA NHLEPWLQLE GKVVFVTGAS AGLGREFCLD LASSGCRVVA GARRADRLKS LCDEINTMAS LVRAMAIELD VTADGTTIEA
101: SVKTAWDAFG HIDALINNAG VRGT

Best Arabidopsis Sequence Match ( AT3G55310.1 )
(BLAST)

001: MSNHQTVLKQ LEPWCELKDK VVLVTGASSG IGREICLDLA KAGCQVIAAA RRVDRLNSLC SEINSFSSTG IQAAALELDV SSDAATIQKA VREAWDIFGK
101: IDALINNAGI RGNVKLSLDL SEDEWDNVFN TNLKGPWLVA KYVCVLMRDA KRGGSVINIS SVAGVRSIVP GGLAYSCSKG GVDTMSRMMA IELGVHKIRV
201: NSIAPGLFKS EITQALMQKE WLKNVTERTV PLKVQQTIDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL

Arabidopsis Description

Beta-ketoacyl-ACP reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q67Z59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.