Factsheet for PGSC0003DMT400083885

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

cytosol 1
peroxisome 1
plastid 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044940.1.1	Tomato	nucleus	95.57	95.57
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	86.35	86.35
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	79.34	79.63
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	75.65	75.65
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	74.17	74.44
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	23.99	71.43
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	71.59	71.32
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	35.06	70.37
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	59.41	70.0
PGSC0003DMT400088158	Potato	cytosol	65.68	69.26
CDY29207	Canola	plastid	35.42	64.86
Bra024488.1-P	Field mustard	plastid	35.42	64.86
PGSC0003DMT400072205	Potato	cytosol	68.27	63.79
CDY07809	Canola	plastid	34.69	63.51
CDY29203	Canola	cytosol	61.99	60.43
Bra040871.1-P	Field mustard	cytosol	61.99	60.43
KRH71621	Soybean	cytosol	62.73	60.28
PGSC0003DMT400018472	Potato	cytosol	61.25	60.14
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	24.35	59.46
CDY07814	Canola	cytosol	60.89	59.35
CDY03343	Canola	cytosol, nucleus, peroxisome	61.25	59.29
CDY48725	Canola	cytosol, peroxisome, plastid	62.36	58.88
KRH71588	Soybean	cytosol	61.25	58.87
AT3G55310.1	Thale cress	cytosol	60.52	58.78
AT3G55290.1	Thale cress	cytosol	60.15	58.21
Bra014757.1-P	Field mustard	cytosol	60.15	58.21
Bra036706.1-P	Field mustard	cytosol	61.62	58.19
CDX76107	Canola	cytosol, nucleus, peroxisome	59.78	57.86
Bra002097.1-P	Field mustard	cytosol	59.04	57.55
CDY65313	Canola	cytosol, nucleus, peroxisome	59.78	57.45
Bra014762.1-P	Field mustard	cytosol	59.04	57.14
Zm00001d031453_P001	Maize	cytosol	59.04	57.14
EES14264	Sorghum	cytosol, plastid	58.67	56.99
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	60.52	56.94
CDX73333	Canola	cytosol, nucleus, peroxisome	58.67	56.79
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	58.67	56.38
TraesCS7D01G245700.1	Wheat	cytosol	58.67	56.18
TraesCS7A01G246900.1	Wheat	plastid	58.67	56.18
PGSC0003DMT400062814	Potato	cytosol	20.66	56.0
Os08t0510400-01	Rice	plastid	58.67	55.99
CDY44938	Canola	cytosol, peroxisome, plastid	58.67	55.99
Bra014761.1-P	Field mustard	cytosol	52.4	55.91
TraesCS7B01G144400.1	Wheat	cytosol	58.3	55.83
TraesCS7A01G427800.1	Wheat	mitochondrion	56.83	55.2
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	25.09	54.84
AT1G63380.2	Thale cress	cytosol	57.93	54.7
Bra014760.1-P	Field mustard	plastid	46.13	54.35
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	55.35	53.76
PGSC0003DMT400021571	Potato	cytosol	34.32	53.45
TraesCS2D01G531000.1	Wheat	plastid	54.61	53.05
CDY02920	Canola	cytosol	45.76	52.32
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	59.04	51.28
HORVU7Hr1G050760.2	Barley	vacuole	58.3	50.64
CDY40209	Canola	peroxisome	57.93	50.32
GSMUA_Achr3P03770_001	Banana	cytosol	10.33	49.12
HORVU2Hr1G116450.1	Barley	plastid	54.98	47.0
KRH76339	Soybean	cytosol	17.71	42.48
Bra007151.1-P	Field mustard	cytosol	58.3	35.27
CDX73391	Canola	cytosol	58.67	33.9
CDX91138	Canola	cytosol, plastid	18.08	30.43
PGSC0003DMT400015737	Potato	cytosol	26.94	27.44

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:M1D7A2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	EnsemblPlantsGene:PGSC0003DMG400033642
PGSC:PGSC0003DMG400033642	EnsemblPlants:PGSC0003DMT400083885	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375
PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000295CF55	SEG:seg

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400033642]

Coordinates

chr12:+:51962168..51963474

Molecular Weight (calculated)

28987.9 Da

IEP (calculated)

6.272

GRAVY (calculated)

0.113

Length

271 amino acids

Sequence
(BLAST)

001: MDPWKDLTGK VVMVTGASSG IGLEFCLDLA KAGCRIIAAA RRVDKLKSLC DQINSNSEGS PGAIAIELDV AADGATIESS VQIAWNAFGR IDALVNNAGV
101: RGSVSSSVEL TEEEWNNTYN TNLRGAWMVS KYVCKHMIDA KQGGGSVINI TSMAGLNRVA VPGTIAYATS KMALDMVTKI MAIELGGENI RLNSISPGVF
201: KSEITQSLVE QKWFHKFLYK TLPTRYLGTT DPGLTSLIRY LIHDSSEYVT GNVFIVDGGA SLPGVPIFSS L

Best Arabidopsis Sequence Match ( AT1G63380.3 )
(BLAST)

001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AVALELDVSS EADTIRKAVK EAWETFGKID
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP

Arabidopsis Description

F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.