CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40209	Canola	peroxisome	61.62	92.63
CDX76107	Canola	cytosol, nucleus, peroxisome	48.19	80.71
CDY65313	Canola	cytosol, nucleus, peroxisome	48.4	80.5
CDX73333	Canola	cytosol, nucleus, peroxisome	47.76	80.0
CDY44938	Canola	cytosol, peroxisome, plastid	47.76	78.87
CDY03343	Canola	cytosol, nucleus, peroxisome	46.27	77.5
CDY29203	Canola	cytosol	45.63	76.98
CDY07814	Canola	cytosol	45.2	76.26
CDY48725	Canola	cytosol, peroxisome, plastid	45.42	74.22
CDY07809	Canola	plastid	23.03	72.97
CDY29207	Canola	plastid	22.81	72.3
CDY02920	Canola	cytosol	35.61	70.46
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	19.19	66.67
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	44.14	66.35
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	32.41	66.09
Solyc12g100220.1.1	Tomato	plastid	37.74	65.31
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	37.74	65.31
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	37.1	63.97
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	12.37	63.74
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	36.67	63.7
PGSC0003DMT400088158	Potato	cytosol	34.75	63.42
PGSC0003DMT400072205	Potato	cytosol	39.02	63.1
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	36.25	62.96
Solyc10g080890.1.1	Tomato	cytosol	38.59	62.41
VIT_08s0040g01190.t01	Wine grape	cytosol	37.95	62.24
Solyc12g045030.1.1	Tomato	nucleus	35.82	61.99
Solyc10g080900.1.1	Tomato	plastid	37.74	61.67
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	35.61	61.62
VIT_08s0040g01200.t01	Wine grape	cytosol	37.53	61.54
Solyc10g006860.2.1	Tomato	plastid	35.61	60.51
KRH71588	Soybean	cytosol	36.25	60.28
Os08t0510400-01	Rice	plastid	36.46	60.21
Solyc12g044940.1.1	Tomato	nucleus	34.75	60.15
KRH71621	Soybean	cytosol	35.61	59.22
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	33.9	58.67
EES14264	Sorghum	cytosol, plastid	34.75	58.42
Zm00001d031453_P001	Maize	cytosol	34.75	58.21
PGSC0003DMT400062814	Potato	cytosol	12.15	57.0
TraesCS7D01G245700.1	Wheat	cytosol	34.33	56.89
TraesCS7A01G427800.1	Wheat	mitochondrion	33.69	56.63
TraesCS7A01G246900.1	Wheat	plastid	33.9	56.18
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	33.26	55.91
TraesCS7B01G144400.1	Wheat	cytosol	33.69	55.83
TraesCS2D01G531000.1	Wheat	plastid	32.41	54.48
HORVU7Hr1G050760.2	Barley	vacuole	34.97	52.56
Solyc12g036510.1.1	Tomato	cytosol	24.52	48.73
HORVU2Hr1G116450.1	Barley	plastid	32.62	48.27
VIT_08s0040g01210.t01	Wine grape	cytosol	27.93	46.29
KRH76339	Soybean	cytosol	10.45	43.36
CDX91138	Canola	cytosol, plastid	12.15	35.4
CDY65036	Canola	cytosol	15.14	27.0
CDY02527	Canola	cytosol	15.14	27.0
CDX69242	Canola	cytosol, nucleus, plasma membrane, plastid	8.53	16.39

Protein Annotations

MapMan:17.1.2.1.24	Gene3D:3.30.70.330	Gene3D:3.40.50.720	GO:A0A078C8I9	EnsemblPlants:CDX73391	ProteinID:CDX73391
ProteinID:CDX73391.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00108863001
InterPro:IPR012677	HAMAP:MF_01369_A	InterPro:NAD(P)-bd_dom_sf	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00106	PFAM:PF00276
PFAM:PF03939	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375	PANTHER:PTHR44375:SF1
InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_L23/L25_N	InterPro:Ribosomal_L25/23	InterPro:SDR_fam	SUPFAM:SSF51735	SUPFAM:SSF54189
InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0004EF4B2F	SEG:seg	:	:	:

Description

BnaC08g26120D

Coordinates

chrLK031799:-:66936..69786

Molecular Weight (calculated)

52026.4 Da

IEP (calculated)

10.188

GRAVY (calculated)

-0.266

Length

469 amino acids

Sequence
(BLAST)

001: MSAELEVERL LPSDNLEYVL LTIDVTKKAD SKAKALKAAK AVKSGQIIKK KAKKIRTKVT FHRPKTLTKA RDPKYPRISA TPRNKLDHYG ILKYPLTTES
101: AMKKIEDNNT LVFIVDIRAD KKKIKDAVKK MYDIQTKKVN TLIRPDGTKK AYVRLTPDYD ALDICFDEAA GDFRERDSFT LRNTMSSNHQ TVMKQLEPWC
201: ELKDKVVLLT GASSGIGREI CLDLAKSGCK IIAAARRLDR LQSLCSEINA LFSPTKTKQA APLELDVSSD SSTIQNAVKQ AWDIFGNIDV LINNAGIRGS
301: VKSSLDLSEE EWERVFRTNL TGPWLVSKHV CVLMRDAKRR GGGSVINVSS IAGLQRGKLP GGLAYACSKG GLDIMTKMMA VELGEYGIRV NSIAPGLFKS
401: EITEGLMRKE WMKNVRERIV PLKVQQSVDP GLTSLVRYLI HDSSRYVSGN VYIVDAGATL SGLPIFSSL

Best Arabidopsis Sequence Match ( AT1G62610.4 )
(BLAST)

001: MSNHQTKQVL KQLEPWCELK DKVVLVTGAS SGIGREICLD LCKAGCKIVA AARRVDRLNS LCSEINSFGA IGVQAAALEL DVSSDADTIR KAVKEAWEIF
101: GTIDVLINNA GIRGNVKSSL DLSKEEWDKV FRTNLTGSWL ISKYVCLLMR DAKRGGSVIN VSSISGLHRG LLRGGLAYAC SKGGVDTMTR MMAIELAVYK
201: IRVNSIAPGI FRSEITQGLF QKEWLEKVTE KIVPLKMQQT VDPGLTSLVR YLIHDSSQYV TGNTYIVDSG ATLPGVPIFS SL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HYU6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.