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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 3
  • plastid 1
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc12g055780.1.1
Solyc12g055790.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G55290.1 Solyc12g055780.1.1 AT1G51580.1 21798944
AT3G55290.1 Solyc12g055790.1.1 AT1G51580.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400061270 Potato cytosol, nucleus, peroxisome 95.2 94.85
Solyc10g006860.2.1 Tomato plastid 75.65 74.28
Solyc12g044940.1.1 Tomato nucleus 72.69 72.69
Solyc12g036510.1.1 Tomato cytosol 63.1 72.46
Solyc12g045030.1.1 Tomato nucleus 72.32 72.32
CDY29207 Canola plastid 38.01 69.59
Bra024488.1-P Field mustard plastid 38.01 69.59
CDY07809 Canola plastid 37.64 68.92
Solyc12g100280.1.1 Tomato cytosol 32.1 67.44
AT3G55290.1 Thale cress cytosol 66.79 64.64
Solyc10g080900.1.1 Tomato plastid 67.9 64.11
AT3G46170.1 Thale cress cytosol, extracellular, peroxisome 67.53 63.54
Solyc10g080890.1.1 Tomato cytosol 67.9 63.45
AT3G55310.1 Thale cress cytosol 65.31 63.44
Bra040871.1-P Field mustard cytosol 64.58 62.95
CDY29203 Canola cytosol 64.58 62.95
CDX76107 Canola cytosol, nucleus, peroxisome 64.58 62.5
Bra014757.1-P Field mustard cytosol 64.58 62.5
Bra002097.1-P Field mustard cytosol 63.84 62.23
CDX73333 Canola cytosol, nucleus, peroxisome 64.21 62.14
CDY65313 Canola cytosol, nucleus, peroxisome 64.58 62.06
CDY07814 Canola cytosol 63.47 61.87
Bra014760.1-P Field mustard plastid 52.4 61.74
CDY44938 Canola cytosol, peroxisome, plastid 64.21 61.27
Solyc10g078360.1.1 Tomato cytosol 65.68 61.17
Bra014762.1-P Field mustard cytosol 63.1 61.07
Bra014761.1-P Field mustard cytosol 57.2 61.02
CDY03343 Canola cytosol, nucleus, peroxisome 62.73 60.71
TraesCS7D01G245700.1 Wheat cytosol 63.1 60.42
TraesCS7A01G427800.1 Wheat mitochondrion 61.99 60.22
TraesCS7A01G246900.1 Wheat plastid 62.73 60.07
CDY48725 Canola cytosol, peroxisome, plastid 63.1 59.58
Zm00001d031453_P001 Maize cytosol 61.25 59.29
Bra036706.1-P Field mustard cytosol 62.73 59.23
AT1G62610.4 Thale cress cytosol, nucleus, peroxisome 61.62 59.22
Os08t0510400-01 Rice plastid 61.99 59.15
EES14264 Sorghum cytosol, plastid 60.89 59.14
TraesCS7B01G144400.1 Wheat cytosol 61.25 58.66
TraesCS2A01G528100.1 Wheat cytosol, peroxisome, plastid 60.15 58.42
AT1G63380.2 Thale cress cytosol 61.62 58.19
GSMUA_Achr3P03770_001 Banana cytosol 12.18 57.89
TraesCS2D01G531000.1 Wheat plastid 59.04 57.35
CDY40209 Canola peroxisome 64.21 55.77
AT2G17845.1 Thale cress golgi, peroxisome, plastid 63.84 55.45
HORVU7Hr1G050760.2 Barley vacuole 62.73 54.49
CDY02920 Canola cytosol 47.23 54.01
HORVU2Hr1G116450.1 Barley plastid 58.67 50.16
Bra007151.1-P Field mustard cytosol 65.31 39.51
CDX73391 Canola cytosol 65.31 37.74
Solyc07g047800.2.1 Tomato cytosol, nucleus, plastid 29.52 30.08
CDX91138 Canola cytosol, plastid 16.24 27.33
Protein Annotations
EnsemblPlants:Solyc12g100220.1.1EnsemblPlantsGene:Solyc12g100220.1Gene3D:3.40.50.720GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:NAD(P)-bd_dom_sfInterPro:SDR_famInterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR44375PANTHER:PTHR44375:SF1PFAM:PF00106PRINTS:PR00080PRINTS:PR00081ScanProsite:PS00061
SUPFAM:SSF51735UniParc:UPI000276AB77UniProt:K4DI43MapMan:35.1::
Description
No Description!
Coordinates
chr12:+:67021912..67022881
Molecular Weight (calculated)
29428.6 Da
IEP (calculated)
8.310
GRAVY (calculated)
0.079
Length
271 amino acids
Sequence
(BLAST)
001: MEPWKDLTGK VVMVTGASSG IGLEFCLDLA KAGCRIIASA RRVDRLKTLC NKINNSDGLA RRAIAVQLDI TADSATIQAA VQIAWDAFGR IDALINNAGL
101: RGNVYDSLDL PEEEWEHTYK TNLRGAWLVS KYVCRHMRDS KQGGGSVINI SSIAGLNRVL IPGGLAYASS KMALDMVTKM MALELGVDNI RVNSISPGIF
201: KSEITKSLME KEWFNNVTVR TIPLRTLGTT DPALTSTVRY LIHDSSEYIS GNVFIVDAGT TLTGVPIFSS L
Best Arabidopsis Sequence Match ( AT3G55290.1 )
(BLAST)
001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.