Factsheet for Solyc10g080900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g055780.1.1
Solyc12g055790.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	Solyc12g055780.1.1	AT1G51580.1	21798944
AT3G55290.1	Solyc12g055790.1.1	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080890.1.1	Tomato	cytosol	84.67	83.79
Solyc12g100220.1.1	Tomato	plastid	64.11	67.9
Solyc12g045030.1.1	Tomato	nucleus	61.67	65.31
Solyc10g006860.2.1	Tomato	plastid	62.72	65.22
Solyc12g044940.1.1	Tomato	nucleus	60.98	64.58
AT3G55290.1	Thale cress	cytosol	62.37	63.93
Zm00001d031453_P001	Maize	cytosol	62.37	63.93
CDY07809	Canola	plastid	32.75	63.51
CDY29207	Canola	plastid	32.75	63.51
Bra024488.1-P	Field mustard	plastid	32.75	63.51
AT3G55310.1	Thale cress	cytosol	60.63	62.37
EES14264	Sorghum	cytosol, plastid	60.63	62.37
CDY29203	Canola	cytosol	59.93	61.87
Bra040871.1-P	Field mustard	cytosol	59.93	61.87
TraesCS7D01G245700.1	Wheat	cytosol	60.63	61.48
Solyc10g078360.1.1	Tomato	cytosol	62.02	61.17
TraesCS7A01G246900.1	Wheat	plastid	60.28	61.13
CDY07814	Canola	cytosol	58.88	60.79
Bra002097.1-P	Field mustard	cytosol	58.88	60.79
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	60.98	60.76
Bra014757.1-P	Field mustard	cytosol	59.23	60.71
TraesCS7A01G427800.1	Wheat	mitochondrion	58.88	60.57
CDX76107	Canola	cytosol, nucleus, peroxisome	58.88	60.36
CDY03343	Canola	cytosol, nucleus, peroxisome	58.88	60.36
Os08t0510400-01	Rice	plastid	59.58	60.21
TraesCS7B01G144400.1	Wheat	cytosol	59.23	60.07
Bra014762.1-P	Field mustard	cytosol	58.54	60.0
CDY48725	Canola	cytosol, peroxisome, plastid	59.93	59.93
Solyc12g100280.1.1	Tomato	cytosol	26.83	59.69
CDX73333	Canola	cytosol, nucleus, peroxisome	58.19	59.64
CDY65313	Canola	cytosol, nucleus, peroxisome	58.19	59.22
CDY44938	Canola	cytosol, peroxisome, plastid	58.54	59.15
Bra036706.1-P	Field mustard	cytosol	58.88	58.88
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	57.84	58.87
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	57.14	58.78
AT1G63380.2	Thale cress	cytosol	58.54	58.54
TraesCS2D01G531000.1	Wheat	plastid	56.79	58.42
Bra014761.1-P	Field mustard	cytosol	50.52	57.09
GSMUA_Achr3P03770_001	Banana	cytosol	11.15	56.14
CDY40209	Canola	peroxisome	60.98	56.09
Bra014760.1-P	Field mustard	plastid	44.95	56.09
HORVU7Hr1G050760.2	Barley	vacuole	60.28	55.45
CDY02920	Canola	cytosol	44.95	54.43
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	57.84	53.21
Solyc12g036510.1.1	Tomato	cytosol	42.16	51.27
HORVU2Hr1G116450.1	Barley	plastid	55.4	50.16
Bra007151.1-P	Field mustard	cytosol	61.32	39.29
CDX73391	Canola	cytosol	61.67	37.74
Solyc07g047800.2.1	Tomato	cytosol, nucleus, plastid	27.53	29.7
CDX91138	Canola	cytosol, plastid	16.38	29.19

Protein Annotations

EnsemblPlants:Solyc10g080900.1.1	EnsemblPlantsGene:Solyc10g080900.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR44375	PANTHER:PTHR44375:SF2	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002769616	UniProt:K4D2X7	MapMan:35.2	:

Description

No Description!

Coordinates

chr10:+:62070907..62073080

Molecular Weight (calculated)

30882.0 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.053

Length

287 amino acids

Sequence
(BLAST)

001: METHAKSVRQ LEPWGELAGK VVMVTGASSG IGRDFCSDLS KAGCRIIAAA RRIDRLQSLC DEINSNSSNG STKSSQDLRA VAIELDVSAN GSAIEAAVQK
101: AWDAFGRIDG LVNNAGFRGS VLSPLELSEE EWEKIHKTNL RGAWLVTKYV CMHMRAANQG GSIINISSIA GINRGQLPGS LAYTSSKEAL NSITKVLALE
201: LGPYKIRVNS ISPGLFKSEI TEGLIQKDWI KNIELRTIPL RTHGTSHPAL TSVVRYLIHD SSEYVSGNMF IVDAGATLPG VPIFSSL

Best Arabidopsis Sequence Match ( AT3G55290.2 )
(BLAST)

001: MSNHQTVLKL LEPWCELKDK VVLVTGASSG IGREICLDLA KAGCQVIAAA RRVDRLNSLC SEINSFSSTG IQAAALELDV SSDAATIQKA VREAWDIFGK
101: IDALINNAGI RGNVKSSLDL SEDEWDNVFK TNLKGPWLVS KHVCMLMRDA KRGGSVINIS SIAGIRGMLP GGLAYACSKG GVDTMSRMMA LELGVHKIRV
201: NSIAPGLFKS EITQGLMQKE WLKNVTERTV PLKVQQTVDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.