Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014757.1-P | Field mustard | cytosol | 90.0 | 90.0 |
| Bra014761.1-P | Field mustard | cytosol | 79.64 | 87.8 |
| CDY02920 | Canola | cytosol | 71.79 | 84.81 |
| Bra014760.1-P | Field mustard | plastid | 69.64 | 84.78 |
| Bra040871.1-P | Field mustard | cytosol | 78.57 | 79.14 |
| Bra002097.1-P | Field mustard | cytosol | 76.79 | 77.34 |
| Bra036706.1-P | Field mustard | cytosol | 78.93 | 77.0 |
| Bra024488.1-P | Field mustard | plastid | 38.93 | 73.65 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 75.71 | 67.95 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 53.93 | 65.65 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 62.86 | 64.94 |
| PGSC0003DMT400088158 | Potato | cytosol | 58.57 | 63.81 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 61.43 | 63.7 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 61.07 | 63.33 |
| Solyc12g100220.1.1 | Tomato | plastid | 61.07 | 63.1 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 63.93 | 62.59 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 30.0 | 62.22 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 60.0 | 61.76 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 62.86 | 61.54 |
| Solyc12g045030.1.1 | Tomato | nucleus | 59.29 | 61.25 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 58.93 | 60.89 |
| PGSC0003DMT400072205 | Potato | cytosol | 62.86 | 60.69 |
| KRH71588 | Soybean | cytosol | 61.07 | 60.64 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 19.64 | 60.44 |
| Solyc10g080890.1.1 | Tomato | cytosol | 62.14 | 60.0 |
| KRH71621 | Soybean | cytosol | 60.36 | 59.93 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 57.14 | 59.04 |
| Solyc12g044940.1.1 | Tomato | nucleus | 56.79 | 58.67 |
| Solyc10g080900.1.1 | Tomato | plastid | 60.0 | 58.54 |
| Solyc10g006860.2.1 | Tomato | plastid | 57.5 | 58.33 |
| Os08t0510400-01 | Rice | plastid | 58.93 | 58.1 |
| EES14264 | Sorghum | cytosol, plastid | 57.86 | 58.06 |
| Zm00001d031453_P001 | Maize | cytosol | 57.5 | 57.5 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 57.5 | 56.89 |
| TraesCS2D01G531000.1 | Wheat | plastid | 56.43 | 56.63 |
| TraesCS7A01G246900.1 | Wheat | plastid | 57.14 | 56.54 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 56.07 | 56.27 |
| PGSC0003DMT400062814 | Potato | cytosol | 20.0 | 56.0 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 55.71 | 55.91 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 56.43 | 55.83 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 57.5 | 51.6 |
| Bra007151.1-P | Field mustard | cytosol | 77.5 | 48.44 |
| Solyc12g036510.1.1 | Tomato | cytosol | 40.71 | 48.31 |
| HORVU2Hr1G116450.1 | Barley | plastid | 53.93 | 47.63 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 45.0 | 44.52 |
| KRH76339 | Soybean | cytosol | 17.14 | 42.48 |
| Bra030964.1-P | Field mustard | cytosol | 24.64 | 26.24 |
Protein Annotations
| EnsemblPlants:Bra014762.1 | EnsemblPlants:Bra014762.1-P | EnsemblPlantsGene:Bra014762 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| InterPro:Sc_DH/Rdtase_CS | PANTHER:PTHR44375 | PANTHER:PTHR44375:SF1 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 |
| ScanProsite:PS00061 | SUPFAM:SSF51735 | UniParc:UPI0002544B2B | UniProt:M4DE43 | MapMan:35.1 | : |
Description
AT3G55290 (E=2e-126) | short-chain dehydrogenase/reductase (SDR) family protein
Coordinates
chrA04:-:2878898..2879740
Molecular Weight (calculated)
30222.9 Da
IEP (calculated)
8.471
GRAVY (calculated)
0.133
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKQVLNQL EPWSELKDKV VLLTGASSGI GREVCLDLGK AGCKIIAAAR RVDRLESLCS EINSLSSTGI ILAAPLELDV SSDAATIQKA VKQAWDIFGK
101: IDVLINNAGI RGNVKTCLHL SEDEWDRVFR TNLTGAWLVS KYVCSLMRDA KSGGSVINIS SIAGLHRGML PGGVAYSCSK SGVDIMTKMM AIELGVYNIR
201: VNSIAPGILK SEITQGLLQK EWLKKVTERT TPLKVQQTVD PGITSLVRYL IHDSSRYVSG NIYILDSGGT IPGLPIFSCL
101: IDVLINNAGI RGNVKTCLHL SEDEWDRVFR TNLTGAWLVS KYVCSLMRDA KSGGSVINIS SIAGLHRGML PGGVAYSCSK SGVDIMTKMM AIELGVYNIR
201: VNSIAPGILK SEITQGLLQK EWLKKVTERT TPLKVQQTVD PGITSLVRYL IHDSSRYVSG NIYILDSGGT IPGLPIFSCL
001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.