Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc12g055780.1.1 | |
| Solyc12g055790.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55290.1 | Solyc12g055780.1.1 | AT1G51580.1 | 21798944 |
| AT3G55290.1 | Solyc12g055790.1.1 | AT1G51580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g100220.1.1 | Tomato | plastid | 72.46 | 63.1 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 71.19 | 61.76 |
| Solyc12g100280.1.1 | Tomato | cytosol | 30.51 | 55.81 |
| CDY29207 | Canola | plastid | 31.78 | 50.68 |
| Bra024488.1-P | Field mustard | plastid | 31.78 | 50.68 |
| CDY07809 | Canola | plastid | 31.36 | 50.0 |
| Solyc10g006860.2.1 | Tomato | plastid | 56.78 | 48.55 |
| Solyc12g044940.1.1 | Tomato | nucleus | 53.39 | 46.49 |
| Solyc12g045030.1.1 | Tomato | nucleus | 52.97 | 46.13 |
| Bra014760.1-P | Field mustard | plastid | 42.37 | 43.48 |
| Bra014761.1-P | Field mustard | cytosol | 46.61 | 43.31 |
| Solyc10g080900.1.1 | Tomato | plastid | 51.27 | 42.16 |
| AT3G55290.1 | Thale cress | cytosol | 50.0 | 42.14 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 50.0 | 41.84 |
| CDX76107 | Canola | cytosol, nucleus, peroxisome | 49.58 | 41.79 |
| Bra014757.1-P | Field mustard | cytosol | 49.58 | 41.79 |
| Solyc10g080890.1.1 | Tomato | cytosol | 51.27 | 41.72 |
| CDX73333 | Canola | cytosol, nucleus, peroxisome | 48.73 | 41.07 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 50.0 | 40.97 |
| AT3G55310.1 | Thale cress | cytosol | 48.31 | 40.86 |
| Bra014762.1-P | Field mustard | cytosol | 48.31 | 40.71 |
| CDY44938 | Canola | cytosol, peroxisome, plastid | 48.73 | 40.49 |
| Bra040871.1-P | Field mustard | cytosol | 47.46 | 40.29 |
| CDY29203 | Canola | cytosol | 47.46 | 40.29 |
| Solyc10g078360.1.1 | Tomato | cytosol | 49.58 | 40.21 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 47.46 | 40.0 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 47.46 | 39.72 |
| CDY07814 | Canola | cytosol | 46.61 | 39.57 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 46.61 | 39.43 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 47.88 | 39.37 |
| TraesCS7A01G246900.1 | Wheat | plastid | 47.03 | 39.22 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 47.03 | 39.22 |
| Bra002097.1-P | Field mustard | cytosol | 46.19 | 39.21 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 46.19 | 39.07 |
| TraesCS2D01G531000.1 | Wheat | plastid | 45.76 | 38.71 |
| Bra036706.1-P | Field mustard | cytosol | 47.03 | 38.68 |
| AT1G63380.2 | Thale cress | cytosol | 47.03 | 38.68 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 45.76 | 38.16 |
| Os08t0510400-01 | Rice | plastid | 45.76 | 38.03 |
| EES14264 | Sorghum | cytosol, plastid | 44.92 | 37.99 |
| Zm00001d031453_P001 | Maize | cytosol | 44.49 | 37.5 |
| CDY40209 | Canola | peroxisome | 48.31 | 36.54 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 47.03 | 35.58 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 46.19 | 34.94 |
| HORVU2Hr1G116450.1 | Barley | plastid | 45.34 | 33.75 |
| CDY02920 | Canola | cytosol | 32.63 | 32.49 |
| GSMUA_Achr3P03770_001 | Banana | cytosol | 7.2 | 29.82 |
| Bra007151.1-P | Field mustard | cytosol | 48.73 | 25.67 |
| CDX73391 | Canola | cytosol | 48.73 | 24.52 |
| Solyc07g047800.2.1 | Tomato | cytosol, nucleus, plastid | 23.31 | 20.68 |
| CDX91138 | Canola | cytosol, plastid | 7.63 | 11.18 |
Protein Annotations
| EnsemblPlants:Solyc12g036510.1.1 | EnsemblPlantsGene:Solyc12g036510.1 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR44375 |
| PANTHER:PTHR44375:SF1 | PFAM:PF13561 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI000276A1A9 |
| UniProt:K4DEA8 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:51676463..51677401
Molecular Weight (calculated)
26633.6 Da
IEP (calculated)
7.446
GRAVY (calculated)
0.105
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPWKDLIGK VVMVTESSYG IGIEFCLDSA KTVCRIIASA HRVDSLKTLL LDAFGRINVL INNPCVRGNV YNSLDLPEEE WEHTYKTNLR GAWLVSKYVC
101: RHMRDSKQGG SSIINIPSIA GLNRVLISGG LAYASSKMAL DMVTKLIIQV IQWQMMALEL EVDNFRVNSI SPRIFKFEIT KTLMEKEWFN NVTVSTIPLR
201: TLGTTYPTLT LTVGYLIHDS SEYISGMYSL LMLEQP
101: RHMRDSKQGG SSIINIPSIA GLNRVLISGG LAYASSKMAL DMVTKLIIQV IQWQMMALEL EVDNFRVNSI SPRIFKFEIT KTLMEKEWFN NVTVSTIPLR
201: TLGTTYPTLT LTVGYLIHDS SEYISGMYSL LMLEQP
001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AVALELDVSS EADTIRKAVK EAWETFGKID
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP
Arabidopsis Description
F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.