Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G55290.1 | Thale cress | cytosol | 85.76 | 88.21 |
| AT3G55310.1 | Thale cress | cytosol | 83.33 | 86.02 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 78.82 | 80.5 |
| AT1G63380.2 | Thale cress | cytosol | 78.12 | 78.4 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 64.93 | 69.0 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 74.65 | 68.91 |
| Solyc12g100220.1.1 | Tomato | plastid | 63.54 | 67.53 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 62.15 | 66.3 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 30.9 | 65.93 |
| PGSC0003DMT400088158 | Potato | cytosol | 58.68 | 65.76 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 61.46 | 65.07 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 51.74 | 64.78 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 62.85 | 63.29 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 19.79 | 62.64 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 58.68 | 62.59 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 62.15 | 62.59 |
| Solyc10g080890.1.1 | Tomato | cytosol | 62.85 | 62.41 |
| PGSC0003DMT400072205 | Potato | cytosol | 62.5 | 62.07 |
| KRH71621 | Soybean | cytosol | 60.42 | 61.7 |
| KRH71588 | Soybean | cytosol | 59.72 | 60.99 |
| Solyc10g080900.1.1 | Tomato | plastid | 60.76 | 60.98 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 56.94 | 60.52 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 56.94 | 60.52 |
| Solyc12g045030.1.1 | Tomato | nucleus | 56.6 | 60.15 |
| Solyc10g006860.2.1 | Tomato | plastid | 57.64 | 60.14 |
| Solyc12g044940.1.1 | Tomato | nucleus | 55.9 | 59.41 |
| Os08t0510400-01 | Rice | plastid | 57.29 | 58.1 |
| EES14264 | Sorghum | cytosol, plastid | 56.25 | 58.06 |
| Zm00001d031453_P001 | Maize | cytosol | 56.25 | 57.86 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 55.9 | 56.89 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 54.86 | 56.63 |
| TraesCS7A01G246900.1 | Wheat | plastid | 55.56 | 56.54 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 54.51 | 56.27 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 55.21 | 56.18 |
| PGSC0003DMT400062814 | Potato | cytosol | 19.44 | 56.0 |
| TraesCS2D01G531000.1 | Wheat | plastid | 53.12 | 54.84 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 56.25 | 51.92 |
| Solyc12g036510.1.1 | Tomato | cytosol | 40.97 | 50.0 |
| HORVU2Hr1G116450.1 | Barley | plastid | 53.12 | 48.27 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 44.44 | 45.23 |
| KRH76339 | Soybean | cytosol | 17.71 | 45.13 |
| AT3G01980.3 | Thale cress | cytosol | 28.47 | 27.7 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:823760 | ProteinID:AEE78124.1 | ArrayExpress:AT3G46170 | EnsemblPlantsGene:AT3G46170 |
| RefSeq:AT3G46170 | TAIR:AT3G46170 | RefSeq:AT3G46170-TAIR-G | EnsemblPlants:AT3G46170.1 | TAIR:AT3G46170.1 | ProteinID:CAB90944.1 |
| EMBL:DQ056613 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0046686 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_190203.1 | PFAM:PF00106 |
| PO:PO:0000005 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR44375 | PANTHER:PTHR44375:SF1 |
| UniProt:Q9LX78 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI00000487E7 | SEG:seg |
Description
Dehydrogenase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LX78]
Coordinates
chr3:-:16952521..16953780
Molecular Weight (calculated)
30989.8 Da
IEP (calculated)
9.008
GRAVY (calculated)
0.159
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNHQTLTFV FGEKEVLKQL EPWCELKDKV VLVTGASSGI GREICLDLGK AGCKIIAVAR RVDRLNSLCS EINSSSSTGI QAAALKLDVT SDAATIQKVV
101: QGAWGIFGKI DALINNAGIR GNVKSSLDLS KEEWDNVFKT NLTGPWLVSK YVCVLMRDAK LGGSVINISS IAGIRGILPG ALAYACSKIG VDTMSKMMAV
201: ELGVHKIRVN SIAPGIFKSE ITQGLMQKEW FKNVTERTVP LKLQQTVDPG ITSLVRYLIH DSSQYISGNT YIVDSGATLP GVPIFSSL
101: QGAWGIFGKI DALINNAGIR GNVKSSLDLS KEEWDNVFKT NLTGPWLVSK YVCVLMRDAK LGGSVINISS IAGIRGILPG ALAYACSKIG VDTMSKMMAV
201: ELGVHKIRVN SIAPGIFKSE ITQGLMQKEW FKNVTERTVP LKLQQTVDPG ITSLVRYLIH DSSQYISGNT YIVDSGATLP GVPIFSSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.