Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030964.1-P | Field mustard | cytosol | 70.27 | 79.09 |
| CDY65036 | Canola | cytosol | 70.27 | 79.09 |
| CDY02527 | Canola | cytosol | 68.92 | 77.57 |
| KRH03600 | Soybean | cytosol | 53.04 | 58.58 |
| VIT_14s0068g01760.t01 | Wine grape | cytosol | 52.03 | 57.89 |
| Solyc07g047800.2.1 | Tomato | cytosol, nucleus, plastid | 52.03 | 57.89 |
| PGSC0003DMT400015737 | Potato | cytosol | 51.01 | 56.77 |
| GSMUA_Achr4P16020_001 | Banana | cytosol | 50.34 | 56.02 |
| EER90514 | Sorghum | cytosol | 46.96 | 52.06 |
| Zm00001d012849_P001 | Maize | cytosol | 46.62 | 51.3 |
| GSMUA_Achr8P17880_001 | Banana | cytosol | 17.57 | 49.52 |
| GSMUA_Achr8P17860_001 | Banana | cytosol | 29.05 | 48.31 |
| Os03t0850000-01 | Rice | cytosol | 44.59 | 47.65 |
| TraesCS4A01G339500.1 | Wheat | cytosol | 43.24 | 46.72 |
| TraesCS5B01G549100.1 | Wheat | cytosol, peroxisome, plastid | 42.57 | 45.99 |
| TraesCS5D01G536000.3 | Wheat | endoplasmic reticulum, peroxisome, plastid | 42.57 | 42.42 |
| HORVU7Hr1G092130.2 | Barley | cytosol, nucleus, plastid | 32.77 | 36.33 |
| HORVU3Hr1G097170.1 | Barley | plastid | 32.09 | 35.19 |
| AT3G55290.1 | Thale cress | cytosol | 28.04 | 29.64 |
| AT3G55310.1 | Thale cress | cytosol | 27.36 | 29.03 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 27.7 | 28.47 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 27.03 | 28.37 |
| AT1G63380.2 | Thale cress | cytosol | 26.69 | 27.53 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 27.36 | 25.96 |
Protein Annotations
| MapMan:35.2 | EntrezGene:821069 | ProteinID:AAF03456.1 | ProteinID:AEE73745.1 | ArrayExpress:AT3G01980 | EnsemblPlantsGene:AT3G01980 |
| RefSeq:AT3G01980 | TAIR:AT3G01980 | RefSeq:AT3G01980-TAIR-G | EnsemblPlants:AT3G01980.3 | TAIR:AT3G01980.3 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_001078090.1 | PFAM:PF13561 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | UniProt:Q9SGI2 | SUPFAM:SSF51735 | TMHMM:TMhelix |
| UniParc:UPI00000A6927 | SEG:seg | : | : | : | : |
Description
F28J7.36 protein [Source:UniProtKB/TrEMBL;Acc:Q9SGI2]
Coordinates
chr3:-:327531..329294
Molecular Weight (calculated)
32646.4 Da
IEP (calculated)
7.344
GRAVY (calculated)
0.030
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MENPAKRVLM TSNGDEVSRN IAFHLAKHGC KLVMMGNEGS LRSIVDKIRD SIEGAFPADV IALDMESDSE VAFHAAVQKA WELSGHFDAF LNSYTYQGLI
101: CFLFFTTLPL MLLCVDHSFI QQSFFLAGKV QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH
201: QLVRASAMSL GKHKIRVNMI SRGLHLDDEY TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM
101: CFLFFTTLPL MLLCVDHSFI QQSFFLAGKV QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH
201: QLVRASAMSL GKHKIRVNMI SRGLHLDDEY TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.