Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G339500.1 | Wheat | cytosol | 95.26 | 95.26 |
| TraesCS5D01G536000.3 | Wheat | endoplasmic reticulum, peroxisome, plastid | 94.16 | 86.87 |
| EER90514 | Sorghum | cytosol | 75.18 | 77.15 |
| Zm00001d012849_P001 | Maize | cytosol | 74.82 | 76.21 |
| Os03t0850000-01 | Rice | cytosol | 74.82 | 74.01 |
| HORVU7Hr1G092130.2 | Barley | cytosol, nucleus, plastid | 61.68 | 63.3 |
| HORVU3Hr1G097170.1 | Barley | plastid | 62.04 | 62.96 |
| GSMUA_Achr8P17880_001 | Banana | cytosol | 24.09 | 62.86 |
| GSMUA_Achr4P16020_001 | Banana | cytosol | 56.57 | 58.27 |
| Solyc07g047800.2.1 | Tomato | cytosol, nucleus, plastid | 51.46 | 53.01 |
| PGSC0003DMT400015737 | Potato | cytosol | 51.09 | 52.63 |
| VIT_14s0068g01760.t01 | Wine grape | cytosol | 50.0 | 51.5 |
| KRH03600 | Soybean | cytosol | 49.27 | 50.37 |
| Bra030964.1-P | Field mustard | cytosol | 48.18 | 50.19 |
| CDY65036 | Canola | cytosol | 47.81 | 49.81 |
| CDY02527 | Canola | cytosol | 47.45 | 49.43 |
| GSMUA_Achr8P17860_001 | Banana | cytosol | 31.02 | 47.75 |
| AT3G01980.3 | Thale cress | cytosol | 45.99 | 42.57 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 27.37 | 26.5 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G549100.1 | EnsemblPlantsGene:TraesCS5B01G549100 | Gene3D:3.40.50.720 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR44375 | PANTHER:PTHR44375:SF2 |
| PFAM:PF13561 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 | TIGR:cd05233 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5B:+:701172729..701173946
Molecular Weight (calculated)
28824.7 Da
IEP (calculated)
6.349
GRAVY (calculated)
0.158
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADAAYAKR VLLACNGGAD AVSRGLAVGL ARHGCRLVLV GDEGALAATA EEARRCAGGG EGAVAVVGLD FAVCDEAAVG AAVDAAWRCF GDGGLHALVN
101: CCSYEGEVQD CLSVTEDEYN KTMKVNVITP WLLIKATAMR FRDAQSGGSV VCLTQIIGAE RGLYPGAAAY GTSLGAVHQL VRLSAMELGK HKIRVNAVCR
201: GLHLGDKFPV SVGEEKAEKA TGEVMPLRRW LDPDKDLAST VLYLVGDDSR FMTGTTIYVD GAQSIVRPRM RSFL
101: CCSYEGEVQD CLSVTEDEYN KTMKVNVITP WLLIKATAMR FRDAQSGGSV VCLTQIIGAE RGLYPGAAAY GTSLGAVHQL VRLSAMELGK HKIRVNAVCR
201: GLHLGDKFPV SVGEEKAEKA TGEVMPLRRW LDPDKDLAST VLYLVGDDSR FMTGTTIYVD GAQSIVRPRM RSFL
001: MENPAKRVLM TSNGDEVSRN IAFHLAKHGC KLVMMGNEGS LRSIVDKIRD SIEGAFPADV IALDMESDSE VAFHAAVQKA WELSGHFDAF LNSYTYQGKV
101: QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH QLVRASAMSL GKHKIRVNMI SRGLHLDDEY
201: TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM
101: QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH QLVRASAMSL GKHKIRVNMI SRGLHLDDEY
201: TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM
Arabidopsis Description
F28J7.36 protein [Source:UniProtKB/TrEMBL;Acc:Q9SGI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.