Factsheet for PGSC0003DMT400030316

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, peroxisome, plastid

Predictor Summary:

cytosol 1
peroxisome 1
plastid 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	85.19	84.87
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	77.41	76.84
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	76.67	76.38
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	75.19	75.19
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	74.44	74.17
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	36.67	73.33
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	62.22	73.04
PGSC0003DMT400088158	Potato	cytosol	68.52	71.98
CDY29207	Canola	plastid	38.15	69.59
Bra024488.1-P	Field mustard	plastid	38.15	69.59
CDY07809	Canola	plastid	37.41	68.24
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	22.96	68.13
PGSC0003DMT400072205	Potato	cytosol	71.11	66.21
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	26.3	63.96
AT3G55290.1	Thale cress	cytosol	65.93	63.57
AT3G55310.1	Thale cress	cytosol	65.56	63.44
Bra040871.1-P	Field mustard	cytosol	64.44	62.59
CDY29203	Canola	cytosol	64.44	62.59
CDX73333	Canola	cytosol, nucleus, peroxisome	64.81	62.5
CDY03343	Canola	cytosol, nucleus, peroxisome	64.81	62.5
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	66.3	62.15
PGSC0003DMT400062814	Potato	cytosol	22.96	62.0
CDY07814	Canola	cytosol	63.7	61.87
Bra014757.1-P	Field mustard	cytosol	64.07	61.79
CDX76107	Canola	cytosol, nucleus, peroxisome	64.07	61.79
CDY65313	Canola	cytosol, nucleus, peroxisome	64.44	61.7
CDY48725	Canola	cytosol, peroxisome, plastid	65.56	61.67
CDY44938	Canola	cytosol, peroxisome, plastid	64.81	61.62
KRH71588	Soybean	cytosol	64.07	61.35
PGSC0003DMT400018472	Potato	cytosol	62.59	61.23
Bra014762.1-P	Field mustard	cytosol	63.33	61.07
KRH71621	Soybean	cytosol	63.7	60.99
Bra036706.1-P	Field mustard	cytosol	64.44	60.63
Bra002097.1-P	Field mustard	cytosol	62.22	60.43
Bra014761.1-P	Field mustard	cytosol	55.93	59.45
Bra014760.1-P	Field mustard	plastid	50.37	59.13
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	61.48	58.87
TraesCS7D01G245700.1	Wheat	cytosol	61.48	58.66
TraesCS7A01G427800.1	Wheat	mitochondrion	60.37	58.42
TraesCS7A01G246900.1	Wheat	plastid	61.11	58.3
Zm00001d031453_P001	Maize	cytosol	60.37	58.21
AT1G63380.2	Thale cress	cytosol	61.85	58.19
Os08t0510400-01	Rice	plastid	61.11	58.1
EES14264	Sorghum	cytosol, plastid	59.63	57.71
TraesCS2D01G531000.1	Wheat	plastid	58.89	56.99
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	58.89	56.99
TraesCS7B01G144400.1	Wheat	cytosol	59.63	56.89
GSMUA_Achr3P03770_001	Banana	cytosol	11.85	56.14
CDY02920	Canola	cytosol	48.89	55.7
CDY40209	Canola	peroxisome	63.7	55.13
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	62.22	53.85
HORVU7Hr1G050760.2	Barley	vacuole	61.48	53.21
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	24.07	52.42
PGSC0003DMT400021571	Potato	cytosol	33.7	52.3
HORVU2Hr1G116450.1	Barley	plastid	58.15	49.53
KRH76339	Soybean	cytosol	19.26	46.02
Bra007151.1-P	Field mustard	cytosol	64.07	38.62
CDX73391	Canola	cytosol	63.7	36.67
CDX91138	Canola	cytosol, plastid	17.78	29.81
PGSC0003DMT400015737	Potato	cytosol	28.89	29.32

Protein Annotations

EntrezGene:102594949	Gene3D:3.40.50.720	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M1AU23	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00106	EnsemblPlantsGene:PGSC0003DMG400011602	PGSC:PGSC0003DMG400011602	EnsemblPlants:PGSC0003DMT400030316	PRINTS:PR00080	PRINTS:PR00081
ScanProsite:PS00061	PANTHER:PTHR44375	PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
UniParc:UPI0002960099	RefSeq:XP_015170729.1	:	:	:	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400011602]

Coordinates

chr12:-:52341832..52343164

Molecular Weight (calculated)

29326.4 Da

IEP (calculated)

8.304

GRAVY (calculated)

0.049

Length

270 amino acids

Sequence
(BLAST)

001: MEPWKDLSGK VVMVTGASSG IGLEFCLDLA KAGCKIIAAA RRVERLKSLC DQINSNSEGL QRAIVVQLDV TADGATIESA VQIAWDTFGR IDVLVNNAGV
101: TGKHSSLELS EEEWDNMFNT NLKGAWLVSK YVCRRMRDAK QGGGSVINIS SMAGLNRVVY IGTFGYASSK MALDMVTKNM AMELGVDKIR VNSIAPGYFK
201: SEITEGLMQN KWFNNVTRRT IPLRTSGTIN PALTSVVRYL IHDSSEYISG NVFIVDAGTT LPGVPIFSSL

Best Arabidopsis Sequence Match ( AT3G55290.1 )
(BLAST)

001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.