Factsheet for PGSC0003DMT400074198

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400008728
PGSC0003DMT400040977
PGSC0003DMT400042949
PGSC0003DMT400059813
PGSC0003DMT400063046
PGSC0003DMT400072745
PGSC0003DMT400089433
PGSC0003DMT400094835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	PGSC0003DMT400059813	AT1G69170.1	21798944
AT1G51580.1	PGSC0003DMT400063046	AT1G69170.1	21798944
AT1G51580.1	PGSC0003DMT400072745	AT1G69170.1	21798944
AT1G51580.1	PGSC0003DMT400008728	AT1G69690.1	21798944
AT1G51580.1	PGSC0003DMT400040977	AT2G25490.1	21798944
AT1G51580.1	PGSC0003DMT400042949	AT2G25490.1	21798944
AT1G51580.1	PGSC0003DMT400089433	AT2G25490.1	21798944
AT1G51580.1	PGSC0003DMT400094835	AT2G25490.1	21798944
AT1G51580.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g055780.1.1	Tomato	cytosol, nucleus	79.73	95.68
KRH47290	Soybean	mitochondrion, nucleus	47.52	37.75
KRH44614	Soybean	mitochondrion, nucleus	47.52	37.35
VIT_09s0054g00450.t01	Wine grape	plastid	57.66	36.36
AT1G51580.1	Thale cress	cytosol, plastid	47.07	33.66
CDY52947	Canola	plastid	41.89	32.29
Bra014290.1-P	Field mustard	plastid	42.12	32.19
CDY46555	Canola	plastid	42.12	32.19
TraesCS5B01G276400.1	Wheat	plastid	42.12	29.92
TraesCS5D01G284200.4	Wheat	plastid	42.12	29.82
TraesCS5A01G276800.5	Wheat	plastid	41.44	29.35
Os09t0498600-01	Rice	plastid	39.64	28.57
KXG35952	Sorghum	plastid	39.64	28.3
HORVU5Hr1G075110.3	Barley	mitochondrion	40.99	28.26
Zm00001d006055_P002	Maize	plastid	38.96	27.72
GSMUA_Achr10P...	Banana	nucleus	41.67	27.45
PGSC0003DMT400083772	Potato	plastid	31.98	22.08
PGSC0003DMT400012623	Potato	nucleus, plastid	31.08	20.44
PGSC0003DMT400041750	Potato	plastid	25.45	18.43
PGSC0003DMT400064701	Potato	nucleus	22.75	18.2
PGSC0003DMT400047374	Potato	nucleus	21.17	17.64
PGSC0003DMT400003371	Potato	nucleus	21.4	17.56
PGSC0003DMT400076798	Potato	nucleus	24.1	17.26
PGSC0003DMT400047665	Potato	nucleus	23.65	15.31
PGSC0003DMT400038635	Potato	cytosol	3.83	11.64
PGSC0003DMT400076105	Potato	plastid	9.01	8.66
PGSC0003DMT400051668	Potato	cytosol	9.68	8.4
PGSC0003DMT400051262	Potato	nucleus	9.46	8.37
PGSC0003DMT400066836	Potato	nucleus, plastid	8.33	8.31
PGSC0003DMT400046406	Potato	cytosol	9.91	7.46
Solyc12g055790.1.1	Tomato	nucleus	2.48	4.42
PGSC0003DMT400087680	Potato	plastid	1.8	3.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400074198	EnsemblPlantsGene:PGSC0003DMG400028840	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF174	PFAM:PF00013	PFscan:PS50084	PGSC:PGSC0003DMG400028840	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI00029556E0	UniProt:M1CTC5	MapMan:35.1	:	:

Description

KH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028840]

Coordinates

chr12:-:53301855..53307666

Molecular Weight (calculated)

47982.0 Da

IEP (calculated)

7.260

GRAVY (calculated)

-0.198

Length

444 amino acids

Sequence
(BLAST)

001: MLEVSSSKSL ANGSKGFAFW VELVAPGLPS AGYLSCVITG SFSTVRKALL SVSSCLQDNS RVDLVNPSTP KFSGMSQNGT GYHTPEQFSR SSGVESAGIN
101: HRMVLEEEVM FKVLCPVDKV GNLIGKGGSI IRVMQTETGA SVKVADSASD LDERMVVISA RENLEQRHSP AQEALMRVQG RIAEIGFEPG AAVVSRLLVH
201: ARHMSCLFGN GGILIAELRR VTGASIRIFP REQSPKYGSH TEEVLQVIGS MQSVQDALFQ ITCRLRDAMF PVKPHVSTIA PPHFPPYSEI PSPSFRPRHD
301: PASPSYHSPV GYPHDRAPHF YGYERQGHAP YFDRPPSPGR WGPQAVNSRN TAGVADCSSA SEAAPNLPGT TVEVVIPEMY IKYVYGEDSS NLHQISRISG
401: AKVVIHDPVA GSAYGSAILS GTKDQVEYAQ TLIHAFIYAE KGDT

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.