Factsheet for PGSC0003DMT400064701

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067210.2.1	Tomato	nucleus	98.56	88.8
PGSC0003DMT400003371	Potato	nucleus	78.2	80.22
VIT_14s0108g01040.t01	Wine grape	nucleus	73.87	74.82
KRG93559	Soybean	nucleus	68.29	69.16
KRH40065	Soybean	nucleus	66.49	68.33
KRH18467	Soybean	nucleus	67.39	68.25
KRH01196	Soybean	nucleus	66.67	68.14
VIT_09s0002g00070.t01	Wine grape	mitochondrion	15.32	66.41
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	27.03	63.56
AT5G15270.2	Thale cress	nucleus	60.0	60.77
Bra008709.1-P	Field mustard	nucleus	55.5	59.57
CDY60930	Canola	nucleus	56.76	59.21
CDX69536	Canola	nucleus	56.76	59.21
PGSC0003DMT400047374	Potato	nucleus	56.22	58.54
KRH58152	Soybean	cytosol	13.33	58.27
VIT_14s0006g00030.t01	Wine grape	cytosol	29.01	56.89
CDX70604	Canola	nucleus	57.84	55.34
Bra006294.1-P	Field mustard	nucleus	58.2	53.83
CDX78623	Canola	nucleus	58.2	53.83
PGSC0003DMT400087680	Potato	plastid	13.87	30.92
PGSC0003DMT400038635	Potato	cytosol	6.85	26.03
PGSC0003DMT400076798	Potato	nucleus	29.01	25.97
PGSC0003DMT400012623	Potato	nucleus, plastid	29.37	24.15
PGSC0003DMT400041750	Potato	plastid	25.23	22.84
PGSC0003DMT400074198	Potato	plastid	18.2	22.75
PGSC0003DMT400083772	Potato	plastid	25.77	22.24
PGSC0003DMT400047665	Potato	nucleus	26.13	21.14
PGSC0003DMT400051668	Potato	cytosol	18.2	19.73
PGSC0003DMT400066836	Potato	nucleus, plastid	15.68	19.55
PGSC0003DMT400051262	Potato	nucleus	17.66	19.52
PGSC0003DMT400076105	Potato	plastid	16.04	19.26
PGSC0003DMT400046406	Potato	cytosol	17.12	16.1

Protein Annotations

EntrezGene:102600656	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M1CCR6
PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400025132	PGSC:PGSC0003DMG400025132	EnsemblPlants:PGSC0003DMT400064701	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002958E14	RefSeq:XP_015158912.1	SEG:seg

Description

KH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025132]

Coordinates

chr2:-:25558357..25566224

Molecular Weight (calculated)

60160.4 Da

IEP (calculated)

6.784

GRAVY (calculated)

-0.519

Length

555 amino acids

Sequence
(BLAST)

001: MAGRRDSYGK RSHSQSDYSE NGGNKRRNTR NDKDPFSIGP DDTVYRYLCP VKKIGSIIGK GGEIVKQLRV DTKSKIRIGE TVPDCDERVV TIYSSSEETN
101: EFDGTEDRVC PAQDALFRVY DKIISDDTTD ENSEEASQVT VKLLVPSDQI GCIIGKGGQI VQDIRSETGA QIRILKDKHL PACALSSDEL VQISGEVAVV
201: RKALFEVATR LHNNPSRTQH ILASDAPTIY SSRSSLIGSA GGAPIVGIAP LVGPYGGYKG ESGDWSRSFY SAPRDESASK EFSLRLVCPT ANIGGVIGKG
301: GVIINQIRQE SGAVIKVNSS NAEGDNCVIS ISAKEFFEDT YSPTIEAALR LQPRCREEVE RDSGLISVTT RLLVPASRIG CLIGKGGSII NEMRKITKAN
401: IRILSKEDLP KVASDDDEMV QISGDPDASK DALMQVTSRL RANLFEKEGP MSAFVPVLPY LPMSTDSDTL KYEHRDTRRH GREHSYSAGY GGTSDLPHAD
501: GFGSYGTLQS SSSVGYGAYE GYSPAYPKEG YSHGRSSGSG SSRQNSAPRR KSYGY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.