Factsheet for PGSC0003DMT400087680

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	50.2	18.55
PGSC0003DMT400038635	Potato	cytosol	10.04	17.12
PGSC0003DMT400003371	Potato	nucleus	31.73	14.6
PGSC0003DMT400047374	Potato	nucleus	30.92	14.45
PGSC0003DMT400064701	Potato	nucleus	30.92	13.87
PGSC0003DMT400041750	Potato	plastid	32.53	13.21
PGSC0003DMT400083772	Potato	plastid	31.33	12.13
PGSC0003DMT400066836	Potato	nucleus, plastid	20.08	11.24
PGSC0003DMT400012623	Potato	nucleus, plastid	29.72	10.96
PGSC0003DMT400051262	Potato	nucleus	21.69	10.76
PGSC0003DMT400051668	Potato	cytosol	21.69	10.55
HORVU5Hr1G075110.3	Barley	mitochondrion	26.1	10.09
TraesCS5A01G276800.5	Wheat	plastid	25.3	10.05
PGSC0003DMT400076105	Potato	plastid	18.47	9.96
TraesCS5B01G276400.1	Wheat	plastid	24.9	9.92
PGSC0003DMT400047665	Potato	nucleus	27.31	9.91
Os09t0498600-01	Rice	plastid	24.5	9.9
TraesCS5D01G284200.4	Wheat	plastid	24.9	9.89
KXG35952	Sorghum	plastid	22.89	9.16
Zm00001d006055_P002	Maize	plastid	22.89	9.13
PGSC0003DMT400076798	Potato	nucleus	22.49	9.03
PGSC0003DMT400046406	Potato	cytosol	20.48	8.64
PGSC0003DMT400074198	Potato	plastid	3.21	1.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400087680	EnsemblPlantsGene:PGSC0003DMG400037251	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF173	PFAM:PF00013	PFscan:PS50084	PGSC:PGSC0003DMG400037251	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI0002959F67	UniProt:M1DEB8	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400037251]

Coordinates

chr12:-:53313578..53314327

Molecular Weight (calculated)

26847.9 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.428

Length

249 amino acids

Sequence
(BLAST)

001: MDSSFAHKRH LDTTTAFDTS TPTTKRRHQL LPSSATPPSN SFRTPPPPPP FLKLSPGEAF FRILCPADKT GGVIGKGGAI IRQLREETGA KIRIDDSLAG
101: CDERVIVVIA DSTKKDQTSS DAGGFNGEEL SHSAVNDESS SQAQRALIRV LERILKVDEE GNAVQSEGEG RKDEFSDVRS PQGVVVCRLL APSNQVGSVL
201: GKGGKIIEKI RQETGAQVRV LPKDHMPACA LPGDELIQAM HFLPNFQLS

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.