Factsheet for PGSC0003DMT400076105

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g074330.1.1	Tomato	plastid	38.96	79.3
Solyc05g043210.1.1	Tomato	plastid	39.61	72.33
Solyc05g041740.1.1	Tomato	plastid	31.6	69.52
Solyc05g042180.1.1	Tomato	plastid	36.36	61.54
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	35.28	50.94
TraesCS1B01G229900.1	Wheat	cytosol	45.67	46.99
TraesCS1D01G218700.1	Wheat	cytosol	45.67	46.89
Zm00001d029973_P001	Maize	plasma membrane	45.45	46.88
TraesCS1A01G216900.1	Wheat	cytosol	45.45	46.67
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	44.37	46.49
EER94472	Sorghum	cytosol	45.45	46.46
Os10t0564000-01	Rice	cytosol	45.24	45.63
HORVU1Hr1G055480.1	Barley	plastid	45.67	42.03
GSMUA_Achr8P14980_001	Banana	cytosol	47.4	39.11
PGSC0003DMT400046406	Potato	cytosol	47.4	37.12
GSMUA_Achr11P...	Banana	mitochondrion	45.45	36.65
Os02t0125500-00	Rice	cytosol	33.55	35.31
TraesCS6B01G113100.1	Wheat	cytosol	35.28	34.9
TraesCS6A01G084000.1	Wheat	cytosol	35.28	34.03
Zm00001d015093_P001	Maize	cytosol	32.03	31.62
KXG29352	Sorghum	cytosol	35.28	31.59
PGSC0003DMT400038635	Potato	cytosol	9.96	31.51
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	33.55	31.31
PGSC0003DMT400051668	Potato	cytosol	34.2	30.86
PGSC0003DMT400051262	Potato	nucleus	32.25	29.68
PGSC0003DMT400087680	Potato	plastid	9.96	18.47
PGSC0003DMT400066836	Potato	nucleus, plastid	17.53	18.2
PGSC0003DMT400047374	Potato	nucleus	20.56	17.82
PGSC0003DMT400003371	Potato	nucleus	19.05	16.27
PGSC0003DMT400064701	Potato	nucleus	19.26	16.04
PGSC0003DMT400076798	Potato	nucleus	17.97	13.39
PGSC0003DMT400041750	Potato	plastid	17.1	12.89
PGSC0003DMT400012623	Potato	nucleus, plastid	17.97	12.3
PGSC0003DMT400083772	Potato	plastid	16.02	11.51
PGSC0003DMT400047665	Potato	nucleus	16.23	10.93
PGSC0003DMT400074198	Potato	plastid	8.66	9.01

Protein Annotations

EntrezGene:102587078	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	UniProt:M1CW70	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400029594	PGSC:PGSC0003DMG400029594	EnsemblPlants:PGSC0003DMT400076105
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002962335
RefSeq:XP_006355217.1	SEG:seg	:	:	:	:

Description

UPA21 [Source:PGSC_GENE;Acc:PGSC0003DMG400029594]

Coordinates

chr8:-:45178465..45182866

Molecular Weight (calculated)

49450.6 Da

IEP (calculated)

5.362

GRAVY (calculated)

-0.190

Length

462 amino acids

Sequence
(BLAST)

001: MVYSTVTDSS FPPAIQGSSA VAPPPPESFA VKSGVTGSVA TEMVAIRPEA AGESVAIVQK WPGWPGDNVF RLVVPLAKVG GIIGRRGELV KRMCEETGAS
101: IRVLEGPLGN ADRIVLISGR ENPDAEVSPA MDAALRIFKR VAGLNNDDPG AGAAGAAFCF SRLLVASSQA NHLIGRRGTT IKSIQERSGA ALRVLSADDV
201: APYATEDERI IEIHGEGLKV LDAFEAVVRL LRKFLVDHSM IPVIEKMYNA NISQDQLAES WADKPQSSKF QPSGPAPASQ AAAVSGYSFS MNRDPYLLDC
301: ETAMDFELPR STLPRYGQDP GLGGIHTSVA GRAGPIVTQI TKVMQVPLGY AEDIIGVGGG NIAYIRRTSR AALTVQESRV PEEITIEIKG TSSEVQAAEQ
401: LIQEFINNHK EPAPRMYGTR EPEFGSFSRY GDPYSSSSSF PSQSFEGYGS SSLGAGYNRY RY

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.