Factsheet for TraesCS1D01G218700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G229900.1	Wheat	cytosol	98.67	98.89
TraesCS1A01G216900.1	Wheat	cytosol	98.67	98.67
HORVU1Hr1G055480.1	Barley	plastid	98.0	87.85
EER94472	Sorghum	cytosol	85.11	84.73
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	82.89	84.58
Os10t0564000-01	Rice	cytosol	85.33	83.84
Zm00001d029973_P001	Maize	plasma membrane	83.11	83.48
KRH19104	Soybean	nucleus	54.44	56.19
KRH02776	Soybean	nucleus	54.22	55.96
KRH37335	Soybean	cytosol, nucleus	52.89	53.72
VIT_11s0052g00030.t01	Wine grape	plastid	55.33	53.43
KRH12329	Soybean	cytosol, nucleus	52.44	53.39
Solyc07g008490.2.1	Tomato	nucleus	50.89	47.51
PGSC0003DMT400076105	Potato	plastid	46.89	45.67
Bra019133.1-P	Field mustard	cytosol	39.78	44.97
GSMUA_Achr8P14980_001	Banana	cytosol	55.11	44.29
AT4G26000.1	Thale cress	cytosol	47.56	43.23
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	45.78	42.92
Solyc05g041740.1.1	Tomato	plastid	20.0	42.86
GSMUA_Achr11P...	Banana	mitochondrion	54.0	42.41
CDY42768	Canola	cytosol	46.44	42.39
CDX92741	Canola	cytosol	46.0	41.99
Solyc08g074330.1.1	Tomato	plastid	21.11	41.85
Solyc05g043210.1.1	Tomato	plastid	22.0	39.13
PGSC0003DMT400046406	Potato	cytosol	50.89	38.81
Bra013940.1-P	Field mustard	cytosol	35.11	37.18
CDX89376	Canola	cytosol	35.11	37.18
CDY65294	Canola	cytosol	35.33	36.22
Solyc05g042180.1.1	Tomato	plastid	21.33	35.16
TraesCS4D01G068400.1	Wheat	nucleus	38.44	33.66
TraesCS5D01G071000.1	Wheat	nucleus	37.78	32.76
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	22.22	31.25
TraesCS1D01G134700.1	Wheat	cytosol	31.56	23.67
TraesCS4D01G160700.2	Wheat	nucleus	21.56	17.23
TraesCS5D01G538200.3	Wheat	nucleus	20.89	14.92
TraesCS3D01G519700.1	Wheat	nucleus	20.0	14.26
TraesCS7D01G341400.1	Wheat	nucleus	18.67	12.48
TraesCS1D01G161200.3	Wheat	nucleus	22.22	12.02
TraesCS3D01G166400.1	Wheat	cytosol, mitochondrion, nucleus	18.67	11.91
TraesCS5D01G284200.4	Wheat	plastid	15.33	11.0

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299
GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0048367	GO:GO:0048467
GO:GO:0048577	GO:GO:0048579	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322	SUPFAM:SSF54791
EnsemblPlantsGene:TraesCS1D01G218700	EnsemblPlants:TraesCS1D01G218700.1	TIGR:cd00105	TIGR:cd02396	SEG:seg	:

Description

No Description!

Coordinates

chr1D:-:305586790..305590786

Molecular Weight (calculated)

48149.0 Da

IEP (calculated)

5.329

GRAVY (calculated)

-0.241

Length

450 amino acids

Sequence
(BLAST)

001: MDDPAAAATA AATEVGVPAS PPPPAAEEAD ASAEAEAVPE AKRWPGWPGD NVFRMVVPVL KVGSIIGRKG ELIKRLVEET KARVRVLEGP VGATERIVLV
101: SAKEDPGLEL PPAVDALIRV FKRVNGITDG AAEGTQTAAA PGVCAARLVV PGAQAINLIG KQGASIKAIQ EGTGATIRVI SVDERDRPFY VTDDERIVEI
201: QGETEKVLKA LQAVSNHLRK FLVDHSVLPL FEKTNAPVSQ DRSAETWNDM PHHSIVSTQV NQQPEVRDEY VLPMKRDHLY LEREPLVEHN IHRSGVSLYG
301: RDPALSALRP SGMHGAGPLL TQITQTMQIP LTYAEDIIGV KGANIAYIRA NSGAVVTIQE SLGSPDDITV EIKGTSSQVQ SAQQLIQDSL ATHREPVRSS
401: YAGVLDPLYR SSYPYGSSAY PSSSLPSYSN MDGSGYSSSG LGGYGSTYRY

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.