Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G333800.1 | Wheat | nucleus | 98.37 | 99.1 |
| HORVU7Hr1G082230.1 | Barley | nucleus | 90.19 | 96.96 |
| TraesCS7B01G245400.2 | Wheat | nucleus | 98.22 | 93.1 |
| Os06t0342500-01 | Rice | cytosol | 81.43 | 82.78 |
| KXG20038 | Sorghum | nucleus | 81.43 | 82.04 |
| Zm00001d046033_P001 | Maize | nucleus | 79.64 | 80.36 |
| Zm00001d037055_P003 | Maize | nucleus | 79.05 | 71.89 |
| GSMUA_Achr2P15270_001 | Banana | nucleus | 60.77 | 58.85 |
| KRH64403 | Soybean | nucleus | 47.99 | 50.16 |
| KRH53532 | Soybean | nucleus | 48.14 | 50.08 |
| VIT_16s0098g01660.t01 | Wine grape | nucleus | 48.74 | 49.62 |
| AT5G53060.1 | Thale cress | nucleus | 47.4 | 48.93 |
| CDX96185 | Canola | nucleus | 45.77 | 48.05 |
| Solyc03g082980.2.1 | Tomato | nucleus | 47.25 | 47.6 |
| CDY27030 | Canola | nucleus | 46.66 | 47.22 |
| Bra022624.1-P | Field mustard | nucleus | 46.21 | 47.05 |
| Bra003085.1-P | Field mustard | nucleus | 43.83 | 46.17 |
| PGSC0003DMT400047665 | Potato | nucleus | 46.95 | 46.06 |
| CDY56908 | Canola | nucleus | 42.94 | 45.44 |
| CDY49453 | Canola | nucleus | 43.24 | 45.33 |
| TraesCS5D01G284200.4 | Wheat | plastid | 20.65 | 22.17 |
| TraesCS5D01G538200.3 | Wheat | nucleus | 20.65 | 22.06 |
| TraesCS3D01G519700.1 | Wheat | nucleus | 20.21 | 21.55 |
| TraesCS4D01G160700.2 | Wheat | nucleus | 17.83 | 21.31 |
| TraesCS3D01G166400.1 | Wheat | cytosol, mitochondrion, nucleus | 20.95 | 20.0 |
| TraesCS1D01G218700.1 | Wheat | cytosol | 12.48 | 18.67 |
| TraesCS1D01G161200.3 | Wheat | nucleus | 22.59 | 18.27 |
| TraesCS5D01G071000.1 | Wheat | nucleus | 13.97 | 18.11 |
| TraesCS4D01G068400.1 | Wheat | nucleus | 13.37 | 17.51 |
| TraesCS1D01G134700.1 | Wheat | cytosol | 11.44 | 12.83 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009867 | GO:GO:0009987 | GO:GO:0010286 | GO:GO:0010445 | GO:GO:0010468 |
| GO:GO:0019538 | GO:GO:0031053 | GO:GO:0040029 | GO:GO:0070878 | GO:GO:1900150 | InterPro:IPR036612 |
| InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFscan:PS50084 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF134 | SMART:SM00322 | SUPFAM:SSF54791 | EnsemblPlantsGene:TraesCS7D01G341400 | EnsemblPlants:TraesCS7D01G341400.1 | TIGR:cd00105 |
| TIGR:cd02396 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:436971318..436979405
Molecular Weight (calculated)
72786.1 Da
IEP (calculated)
5.963
GRAVY (calculated)
-0.525
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSRSKRGY HYDQDSPPPR SKPRFDRRGG GGGPNTNSNY HRRGPPGGGG GGGGGAPDRR GGFLPPDAAP PPLPPPPPPA SSAAAGGGGP GQTTSFRILC
101: PESKTYGFPA SFINNAQDDS GAIITIHPPF PGDPVRVIET ADGVPREADG RPPMFSPAQE ALLMVHRRIL ETQPDDGDED GEYGPRGKDA RDRGKVTTRL
201: IVPRQHVGCL LGKGGKIIEQ MRSETKTHIR ILPREQNMPR CVSLSEEVVQ VVGEGNCVKK AVAIISDRLK ESLHRDRGPF LRGRNSPEHR ISQADEYLGG
301: GQQMPAFEEP YPRFDQIRNN GSMEPPGYEF DSNGSKFNEH PEIPFDEIIF RILCPNDKAS SLVGSRDGII DMLQAEVGVD VRLTDLIAGS DERTLIVTSR
401: EGPDHELFPA QEALLHIQTF IVDLGPDKDN IITTRLLVPS SEIACFEGRD GSLSDIQRQT SANIQILPRE ELPSCALESD ELIQIVGEIR AARNALMQVT
501: SKLRSYIYRE MSAPIQMGSI NVHGSISPAK GSPRGLYAGN DLPMPIYQQA PQMATSWHSK DSGLSASGSF EQGSSINDDI RQTNTKRFAV PLVTRSTLEV
601: VIPQSAVASL SMRAGSKLAQ ISEMSGASVT LAEDRPGVME KVVRISGTPE QADKAQSLLQ GFILSIQDDI PSG
101: PESKTYGFPA SFINNAQDDS GAIITIHPPF PGDPVRVIET ADGVPREADG RPPMFSPAQE ALLMVHRRIL ETQPDDGDED GEYGPRGKDA RDRGKVTTRL
201: IVPRQHVGCL LGKGGKIIEQ MRSETKTHIR ILPREQNMPR CVSLSEEVVQ VVGEGNCVKK AVAIISDRLK ESLHRDRGPF LRGRNSPEHR ISQADEYLGG
301: GQQMPAFEEP YPRFDQIRNN GSMEPPGYEF DSNGSKFNEH PEIPFDEIIF RILCPNDKAS SLVGSRDGII DMLQAEVGVD VRLTDLIAGS DERTLIVTSR
401: EGPDHELFPA QEALLHIQTF IVDLGPDKDN IITTRLLVPS SEIACFEGRD GSLSDIQRQT SANIQILPRE ELPSCALESD ELIQIVGEIR AARNALMQVT
501: SKLRSYIYRE MSAPIQMGSI NVHGSISPAK GSPRGLYAGN DLPMPIYQQA PQMATSWHSK DSGLSASGSF EQGSSINDDI RQTNTKRFAV PLVTRSTLEV
601: VIPQSAVASL SMRAGSKLAQ ISEMSGASVT LAEDRPGVME KVVRISGTPE QADKAQSLLQ GFILSIQDDI PSG
001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP
Arabidopsis Description
RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.