Factsheet for Os06t0342500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0194200-01
Os03t0681900-01
Os04t0665700-01
Os06t0618100-01
Os11t0689500-01
Os11t0689650-00
Os12t0566200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	Os11t0689500-01	AT4G24680.1	21798944
AT5G53060.1	Os11t0689650-00	AT4G24680.1	21798944
AT5G53060.1	Os12t0566200-01	AT4G24680.1	21798944
AT5G53060.1	Os03t0681900-01	AT5G04280.1	21798944
AT5G53060.1	Os02t0194200-01	AT5G06770.1	21798944
AT5G53060.1	Os04t0665700-01	AT5G06770.1	21798944
AT5G53060.1	Os06t0618100-01	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G082230.1	Barley	nucleus	78.1	82.59
TraesCS7A01G333800.1	Wheat	nucleus	82.63	81.89
TraesCS7D01G341400.1	Wheat	nucleus	82.78	81.43
KXG20038	Sorghum	nucleus	81.72	80.99
Zm00001d046033_P001	Maize	nucleus	80.21	79.61
TraesCS7B01G245400.2	Wheat	nucleus	82.63	77.04
Zm00001d037055_P003	Maize	nucleus	79.76	71.35
GSMUA_Achr2P15270_001	Banana	nucleus	61.78	58.85
KRH53532	Soybean	nucleus	49.24	50.39
KRH64403	Soybean	nucleus	48.94	50.31
VIT_16s0098g01660.t01	Wine grape	nucleus	50.15	50.23
AT5G53060.1	Thale cress	nucleus	46.68	47.39
Solyc03g082980.2.1	Tomato	nucleus	47.58	47.16
CDX96185	Canola	nucleus	45.62	47.11
Bra022624.1-P	Field mustard	nucleus	46.37	46.44
CDY27030	Canola	nucleus	46.37	46.17
PGSC0003DMT400047665	Potato	nucleus	47.43	45.77
Bra003085.1-P	Field mustard	nucleus	44.11	45.7
CDY56908	Canola	nucleus	43.66	45.44
CDY49453	Canola	nucleus	43.66	45.02
Os01t0235800-01	Rice	cytosol	17.67	25.0
Os03t0376800-02	Rice	nucleus	19.49	23.8
Os09t0498600-01	Rice	plastid	20.85	22.4
Os10t0495000-01	Rice	nucleus	23.26	20.21
Os07t0439100-01	Rice	cytosol	6.8	19.31
Os10t0564000-01	Rice	cytosol	12.99	18.78
Os03t0627500-01	Rice	cytosol	13.9	18.04
Os02t0125500-00	Rice	cytosol	9.21	13.9
Os12t0597600-01	Rice	cytosol	3.02	12.05
Os10t0414700-01	Rice	nucleus	11.33	12.04
Os08t0200300-02	Rice	plastid	0.45	2.31

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EntrezGene:4340961	ProteinID:BAD61631.1	ProteinID:BAS97632.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006412	GO:GO:0006950
GO:GO:0006970	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009719	GO:GO:0009867	GO:GO:0009987
GO:GO:0010286	GO:GO:0010445	GO:GO:0010468	GO:GO:0019538	GO:GO:0031053	GO:GO:0040029
GO:GO:0070878	GO:GO:1900150	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
EnsemblPlantsGene:Os06g0342500	EnsemblPlants:Os06t0342500-01	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134
UniProt:Q5Z9X9	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0000450606	RefSeq:XP_015644328.1	SEG:seg

Description

K Homology, type 1, subgroup domain containing protein. (Os06t0342500-01)

Coordinates

chr6:-:13690561..13697904

Molecular Weight (calculated)

72253.4 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.577

Length

662 amino acids

Sequence
(BLAST)

001: MDRPRSSKRG YHYDQDSPPP RSKPRFDRRG GPNPNNSYHR RGPPGGGGGD RRGGFQLPPD AAPPPPPPPP PSSAAAGGGG PGMTTSFRIL CPQSKVYGFP
101: PSFIAKVRDD TNAVVTIHLP YPGDAVRVIE TSDGARREAD GRPPSFSPAQ EALLMVHRRI LETEPDDGDE DGEYGPRAKD ARDRGKVTTR LIVPRLHVGC
201: LLGKGGKIIE QMRAETKTHI RILPRDQHTP RCVSLSEEVV QVVGEGNCVK KAVAIISDRL KESLHRDRGP FRGRMNSPEH RFPQEDEYYG GAQQMPAYEE
301: PYGRPDQIRN NTSMELPGYE FDSNGGKIND HTEILFDDII FRILCPSDKV NSLVGTRDGL LEMLQEDVGV DIRLTDSLDG SDERIIIITS REGPDHELFP
401: AQEALLHLQT HIVDLGPDKD NIITTRLLVP SSEIACFEGR DGSLSDIQRQ TSANVQILPR QALPSCALES DELIQIVGEI RAARDALVQI TAKLRSYFYR
501: EIPGPNQLGN ITVHGSISPA KGSPRGPYQG SDIPMPSYQQ AQHVPASWKD SGGGANMSFE QGSNINDDMR QSAAKRFAVP LVTRSTLEVV IPKSAVASLT
601: MRAGSKLAQI SEMSGATVTL ADERPDAIEK VVRISGTPEQ ADKAQSLLQG FILSIQDDIP SG

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.