Factsheet for Bra003085.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005798.1-P
Bra007528.1-P
Bra013824.1-P
Bra014494.1-P
Bra019213.1-P
Bra028719.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	Bra007528.1-P	AT3G60360.1	21798944
AT5G53060.1	Bra014494.1-P	AT3G60360.1	21798944
AT5G53060.1	Bra013824.1-P	AT4G24680.1	21798944
AT5G53060.1	Bra019213.1-P	AT4G24680.1	21798944
AT5G53060.1	Bra005798.1-P	AT5G04280.1	21798944
AT5G53060.1	Bra028719.1-P	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49453	Canola	nucleus	98.44	97.98
CDY56908	Canola	nucleus	97.03	97.48
AT5G53060.1	Thale cress	nucleus	84.82	83.13
Bra022624.1-P	Field mustard	nucleus	84.35	81.54
KRH64403	Soybean	nucleus	62.44	61.96
KRH53532	Soybean	nucleus	62.44	61.67
VIT_16s0098g01660.t01	Wine grape	nucleus	60.56	58.55
Solyc03g082980.2.1	Tomato	nucleus	58.22	55.69
PGSC0003DMT400047665	Potato	nucleus	58.06	54.08
GSMUA_Achr2P15270_001	Banana	nucleus	50.7	46.62
HORVU7Hr1G082230.1	Barley	nucleus	45.38	46.33
TraesCS7A01G333800.1	Wheat	nucleus	46.48	44.46
Os06t0342500-01	Rice	cytosol	45.7	44.11
TraesCS7D01G341400.1	Wheat	nucleus	46.17	43.83
KXG20038	Sorghum	nucleus	45.38	43.41
Zm00001d046033_P001	Maize	nucleus	45.07	43.18
TraesCS7B01G245400.2	Wheat	nucleus	46.01	41.41
Zm00001d037055_P003	Maize	nucleus	44.29	38.24
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	18.15	28.36
Bra026852.1-P	Field mustard	nucleus	20.5	27.01
Bra008709.1-P	Field mustard	nucleus	21.6	26.69
Bra024789.1-P	Field mustard	cytosol	14.71	25.0
Bra013302.1-P	Field mustard	nucleus	22.22	24.23
Bra025032.1-P	Field mustard	nucleus	23.32	23.07
Bra006294.1-P	Field mustard	nucleus	21.44	22.83
Bra014290.1-P	Field mustard	plastid	20.03	22.03
Bra038508.1-P	Field mustard	cytosol, plastid	20.34	20.34
Bra024292.1-P	Field mustard	nucleus	26.45	19.72
Bra030226.1-P	Field mustard	plastid	18.62	19.19
Bra001111.1-P	Field mustard	cytosol	11.42	18.72
Bra013940.1-P	Field mustard	cytosol	10.17	15.29
Bra019133.1-P	Field mustard	cytosol	8.92	14.32

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EnsemblPlantsGene:Bra003085	EnsemblPlants:Bra003085.1	EnsemblPlants:Bra003085.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M4CFV3	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF134	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002543924	SEG:seg	:

Description

AT5G53060 (E=1e-265) | KH domain-containing protein

Coordinates

chrA10:+:5311781..5314374

Molecular Weight (calculated)

69630.7 Da

IEP (calculated)

5.770

GRAVY (calculated)

-0.515

Length

639 amino acids

Sequence
(BLAST)

001: MERSRSKRNY HYDQDYDGDS IGRSKPRYNN NYHNFGGGGG NNRYRGGGNA RPSKSHSDTM ATTTYRVLCH DAKAGGVIGK SGSIIKSIRQ HTGAWINVHE
101: LVPGDVERII EISDNRRRDP DGRMPAFSPA QEALFSVHDR ILESEAQYGY GVAPPPEDEE DYGGVRPGGG KVVTRLVVSK VNVGCLLGRG GKIIEQMRIE
201: TKTHIRILPR ETNLPRCVSQ SDEIVQIVGE PAAVRNALGI VASRLRESQH RDRTHFQGRV HSPERLPADD YIPQQRRQSS DRFNHGNFRN NSFSSRQSNY
301: ADEAPAAASG GENVQQPFYT EELVFKILCP VDKIVNVVGE SQGIVDLLQN DVGVDMSVSD PVAGSDEQII TISSEEAPDD PLFPAQEALL HIQTQIVDLI
401: PDKDNHITTK LLVSSRDSGC LEGKAGSVSE ISRLTGASVQ ILARDEMPQC VSINDVVVQI AGEIKAARDA LVELTLRLRS HMCKELSQKE TPPGSTSTTG
501: PLEGVAGVME VASSNNTTQS REGLAIAPQY KEGGGSVAKA GESEHRDEVP VTASRMSVAL VTRSTLEIVL PDEVIPKLVT KSRNKLAQVS EWSGATVTLV
601: EDRPEETQNV IRISGTPEQA ERAQSLLQGF VLSIQDDGP

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.