Factsheet for Bra030226.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25609	Canola	cytosol	99.03	98.87
Bra038508.1-P	Field mustard	cytosol, plastid	78.55	76.21
AT2G22600.1	Thale cress	mitochondrion	73.06	71.68
KRH39475	Soybean	plastid	31.94	32.41
KRH74462	Soybean	nucleus	30.65	30.84
Solyc11g010840.1.1	Tomato	plastid	27.26	27.57
PGSC0003DMT400041750	Potato	plastid	27.1	27.41
Bra014290.1-P	Field mustard	plastid	23.87	25.47
Bra008709.1-P	Field mustard	nucleus	20.0	23.98
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	15.0	22.74
Bra013302.1-P	Field mustard	nucleus	21.29	22.53
Bra026852.1-P	Field mustard	nucleus	17.58	22.47
Bra024789.1-P	Field mustard	cytosol	12.74	21.01
Bra006294.1-P	Field mustard	nucleus	20.32	21.0
Bra024292.1-P	Field mustard	nucleus	28.39	20.54
OQU88922	Sorghum	nucleus, peroxisome, plastid	21.29	20.5
Bra025032.1-P	Field mustard	nucleus	21.29	20.43
Zm00001d019538_P002	Maize	plastid	21.94	20.15
Bra003085.1-P	Field mustard	nucleus	19.19	18.62
Bra022624.1-P	Field mustard	nucleus	19.03	17.85
Bra019133.1-P	Field mustard	cytosol	10.81	16.83
Os07t0439100-01	Rice	cytosol	6.29	16.74
Bra001111.1-P	Field mustard	cytosol	10.0	15.9
Bra013940.1-P	Field mustard	cytosol	10.32	15.06

Protein Annotations

EnsemblPlants:Bra030226.1	EnsemblPlants:Bra030226.1-P	EnsemblPlantsGene:Bra030226	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF160	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000254420E	UniProt:M4EN56	MapMan:35.1	:

Description

AT2G22600 (E=1e-176) | KH domain-containing protein

Coordinates

chrA04:+:9840249..9843162

Molecular Weight (calculated)

66280.3 Da

IEP (calculated)

6.205

GRAVY (calculated)

-0.069

Length

620 amino acids

Sequence
(BLAST)

001: MNNLSGATTT VSNQNQRQQR RATIHVLPDE VALRVVCHAS VIGGIIGSNG YVVSTLRRET GTKIHCESPV NGSDHWVVFI VGSTAVNKSF LLTDRVGGFA
101: GGEHEGWVTC EVSAAQMALI RVLERSWAVL AAKDSGGVVV GDDKEAYCGI LADRSQIGAV LGLGGKSVEW MRRNSGAMIR VLPPPSCGTN SDELIQITGD
201: VLAVKKALVM VSNFLQNSPP LNGYPPPLCS KAYDSTTEGP HSEFYPSLRS SLPNASETAA SNNTHTPTPS RNRFQDSIDT YRKVVLKLIC TSVAAGGIIG
301: RQGTIIRAMQ IEAGASISIG APLKVSGERV VTITARESLE SGNSPAQKAL GLVFARSVEI DVGKSLFPGA LVKAKLLVPS QFANDFVGKR EAVMVTGVDI
401: HIPVGSQILD CLSENELVIE IMGEYRYVEK ALCQVSSKLR ENLIPKKAVE EVRARVSNPY NLQPSQQNAG RDDSLSVLDG EQDLNMLRIS TEVMKSIDCT
501: HTEANEVNGF THPTSLLENG LTQGMEQLQL CSNGYLSSLP PRSKGVSLRN VTLELAVEKD ALAALYGRDG AGLDNLQQIS GARVDVKDSL IGVEATVLLT
601: GNPEQTQTAM SLFISILSDQ

Best Arabidopsis Sequence Match ( AT2G22600.1 )
(BLAST)

001: MNNRRGVTTA VSKRRPVIHV LPDETAIRVV CHASVIGGII GSNGYVVSKL RRETGTKIHC ESPVNGSDHW VVFIVGSTAV NQSILLTDRV GEFSGGEHED
101: WVTCEVSAAQ TALIRVLERS WVVLAAKDGG GVVDGEDEEA YCGILADRNQ IGAVLGLGGK NVEWMRRNSG AMIRVLPPPI CGTKNDELIQ ITGDVLAVKK
201: ALVMVSSYIQ NNAPLNGYPP PLSIKGYESL STDGNSEDPH SEFFPNLRSS SLSNATEIVA SNRHLPYDGG NSTERKVVFK IIFTSVVAGG IIGKQGTIIR
301: ALQNETGASI SVGAPLKVSG ERVVTVSARE NLESRYSHAQ NALALVFARS VEIDVEKGLR PGLHNGAIVK TKLLVPSHFA NSFNGNGNRE AIIATGADVH
401: ISVGNQVLEW ISENEVVIEI KGEYSHVQKA LTHVSSKLRE NLLPKKVLGE MRARVSNPYE SAGGRSQIYN LQPSQQDASR GDSLSVSAAV PDLKMVRSGA
501: EVLKSNSVMH TEVLKEVDEL NDFTLPQSLL EEDLTQGMKQ LQMSSNGDVS SLPPRSKGVS VRKITLELAV EKDALGSLYG RDGTGVDNLQ QISGANVDVK
601: DPTGTEATVL ISGNPEQART AMSLIESILT DQ

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IJK5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.