Factsheet for Bra019674.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49107	Canola	nucleus	99.51	85.68
Bra026852.1-P	Field mustard	nucleus	90.46	76.29
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	86.8	74.11
Bra024789.1-P	Field mustard	cytosol	51.1	55.59
VIT_01s0026g02650.t01	Wine grape	nucleus	62.84	44.93
PGSC0003DMT400047374	Potato	nucleus	55.99	42.96
Solyc05g007810.2.1	Tomato	nucleus	55.5	42.67
GSMUA_Achr6P10750_001	Banana	nucleus	55.26	42.48
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	54.77	42.26
Os03t0376800-02	Rice	nucleus	55.01	41.51
Zm00001d029328_P002	Maize	nucleus	54.52	41.22
KXG39277	Sorghum	nucleus	53.79	40.59
Bra008709.1-P	Field mustard	nucleus	51.1	40.43
TraesCS4A01G150800.1	Wheat	nucleus	51.59	39.15
TraesCS4B01G166500.2	Wheat	nucleus	52.08	37.83
CDY51849	Canola	cytosol	9.78	37.74
TraesCS4D01G160700.2	Wheat	nucleus	51.59	37.48
HORVU4Hr1G049680.1	Barley	nucleus	51.59	36.25
Bra006294.1-P	Field mustard	nucleus	51.59	35.17
Bra013302.1-P	Field mustard	nucleus	29.83	20.82
Bra025032.1-P	Field mustard	nucleus	31.78	20.12
Bra001111.1-P	Field mustard	cytosol	18.34	19.23
Bra022624.1-P	Field mustard	nucleus	30.07	18.61
Bra003085.1-P	Field mustard	nucleus	28.36	18.15
Bra014290.1-P	Field mustard	plastid	23.47	16.52
Bra013940.1-P	Field mustard	cytosol	15.65	15.06
Bra030226.1-P	Field mustard	plastid	22.74	15.0
Bra038508.1-P	Field mustard	cytosol, plastid	22.49	14.4
Bra024292.1-P	Field mustard	nucleus	29.1	13.89
Bra019133.1-P	Field mustard	cytosol	13.2	13.57

Protein Annotations

EnsemblPlants:Bra019674.1	EnsemblPlants:Bra019674.1-P	EnsemblPlantsGene:Bra019674	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF149	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000253E6B9	UniProt:M4DT31	MapMan:35.1	:

Description

AT1G14170 (E=7e-177) | KH domain-containing protein

Coordinates

chrA06:-:5069426..5072637

Molecular Weight (calculated)

44961.2 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.384

Length

409 amino acids

Sequence
(BLAST)

001: MASSTVRNVH GKRSSFQSEF NGNGASKRRN LHDETDRNVI GSEDTVYRYL CPVKKTGSII GKGGEIAKQI RSETKSNMRI NEALPGCEER VVTIYSTSDE
101: LNHFGDDGEI VCPALDALFK VHDMIVAEVN EEEDDDDLGD KQTVTVRMLV PSDQIGCVIG KGGQVIQNLR NETNAQIRVI KDNLPACALT LSHDELLQII
201: GEPLIVREAL YQVASLLHDN PSRFQHSLLS SPSTLMHQPL ISSHRNHAAA RRDLADATEF CVCFICPAEN VGGVIGKGGG FINQIRQETG ATIRVTTSES
301: EEDDSIIFIS SKEFYEDQSP TVNAAILLQE RCSEKVGKDT NDSTISTRLL VSSSNIGCLI GKGGAVISEM RSVTRANIRI LQKENVPKIA RQDEEMVQNL
401: NSKRRNHVS

Best Arabidopsis Sequence Match ( AT1G14170.3 )
(BLAST)

001: MASTLRNIHG KRSNLQSEFT GNGGSKRRNL HDETDQNVIA SEDTVYRYLC PVKKTGSIIG KGGEIAKQIR SETKSNMRIN EALPGCEERV VTMYSTNEEL
101: NHFGDDGELV CPALDALFKV HDMVVADADQ DDGTDDDNDL GEKQTVTVRM LVPSDQIGCV IGKGGQVIQN LRNDTNAQIR VIKDHLPACA LTLSHDELLL
201: IIGEPLVVRE ALYQVASLLH DNPSRFQHLL LSSSSSSMHQ PGAMLMSAAL TSSHRNYAVR RDIADAREFC VCFICPAENV GGVIGKGGGF INQIRQETGA
301: TIRVNTSETD DDDCIIFISS KEFYEDQSPA VNAAIRLQQR CSEKVGKDAN DLAISTRLLV SSSQIGCLIG KGGAVISEMR SVTRANIRIL QKEDVPKIAR
401: EDEEMVQITG SPDAAMKALT QVILRLRANS FDMDHGLVLL PTSFPYIPQV TESSSKSKYA KRDDHSKLNS NSKRRNHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.