Factsheet for HORVU4Hr1G049680.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G150800.1	Wheat	nucleus	88.83	95.92
TraesCS4D01G160700.2	Wheat	nucleus	84.88	87.74
TraesCS4B01G166500.2	Wheat	nucleus	84.19	87.03
Os03t0376800-02	Rice	nucleus	78.87	84.69
KXG39277	Sorghum	nucleus	74.23	79.7
Zm00001d029328_P002	Maize	nucleus	73.37	78.93
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	63.4	69.62
GSMUA_Achr6P10750_001	Banana	nucleus	57.73	63.16
VIT_01s0026g02650.t01	Wine grape	nucleus	58.93	59.97
PGSC0003DMT400047374	Potato	nucleus	51.72	56.47
Solyc05g007810.2.1	Tomato	nucleus	51.2	56.02
AT2G03110.1	Thale cress	cytosol	14.6	55.56
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.25	51.59
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	41.58	50.52
Bra026852.1-P	Field mustard	nucleus	41.75	50.1
CDY33769	Canola	nucleus	41.75	50.1
CDX81615	Canola	cytosol	39.35	49.89
CDY03018	Canola	nucleus	39.86	49.57
CDY49107	Canola	nucleus	40.21	49.26
CDY39336	Canola	mitochondrion	39.86	49.05
CDY45180	Canola	cytosol	34.02	46.81
Bra024789.1-P	Field mustard	cytosol	29.73	46.01
CDY51849	Canola	cytosol	7.04	38.68
HORVU1Hr1G036300.1	Barley	cytosol	8.42	26.92
HORVU5Hr1G121900.1	Barley	nucleus	26.8	24.68
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	26.63	24.53
HORVU1Hr1G043680.7	Barley	nucleus	32.3	23.07
HORVU1Hr1G055480.1	Barley	plastid	18.38	21.31
HORVU5Hr1G075110.3	Barley	mitochondrion	23.02	20.81
HORVU3Hr1G057270.16	Barley	plastid	26.63	19.97
HORVU7Hr1G082230.1	Barley	nucleus	20.27	18.85
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	17.53	18.82
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	14.95	17.58
HORVU1Hr1G036280.1	Barley	cytosol	9.28	13.17

Protein Annotations

EnsemblPlants:HORVU4Hr1G049680.1	EnsemblPlantsGene:HORVU4Hr1G049680	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI000B465767	UniProt:A0A287NYY3	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr4H:+:404175646..404182204

Molecular Weight (calculated)

62645.8 Da

IEP (calculated)

8.129

GRAVY (calculated)

-0.407

Length

582 amino acids

Sequence
(BLAST)

001: GRLIDRSQIP TTVSTNRYTS LSPRLRSPDL IWYPSPAAGA IMVGPGHRNS HGKRQSDYSE NGGGKRRNPG DDTYAPGPDD TVYRYLCTSR KIGSIIGRGG
101: EIAKQLRSDT QAKIRIGESV PACDERVITI FSSSRETNTI EDTEDKVCPA QDALFRVHEK LATDDGPVNK ENEESLGQVT VRLLVPSDQI GCIIGKGGHI
201: IQGIRSDTGS QIRVLSNEHL PLCATSGDEL LLITGDPMVV RKALLQVSSR LHGNPSRSQH LLASSLNQPF PVGSRLGSSS TAPVVGITPM VSPYGRYKGD
301: MVGDWPSIYQ PRREVSSPKE FSLRLLCAAA NVGGVIGKGG GIIKQIRQES GAFIKVDSSS AEDDCIITVS AKEFFEDPVS PTIDATVRLQ PRCSEKIDAE
401: SGEPSYTTRL LVSTSRIGCL IGKGGSIITE IRRTSRANIR IISKQDVPKV ASDDEEMVLI SGDLDFARHA LLQITTRLKA NFFEREGALS GFPPVIPYHP
501: LPASVSDEKY LSRDNKSAGH DYPYSSGYRA SDDVLPVDRY ANYGSSQVSG GGYGAYSGYS GGSGSSGLSG STYLSSGKRY GY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.