Factsheet for HORVU6Hr1G014510.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G084000.1	Wheat	cytosol	81.21	83.92
TraesCS6B01G113100.1	Wheat	cytosol	75.96	80.51
Os02t0125500-00	Rice	cytosol	52.73	59.45
Zm00001d015093_P001	Maize	cytosol	51.31	54.27
KXG29352	Sorghum	cytosol	52.53	50.39
Solyc05g041740.1.1	Tomato	plastid	17.58	41.43
KRH19104	Soybean	nucleus	33.74	38.3
KRH12329	Soybean	cytosol, nucleus	34.14	38.24
KRH02776	Soybean	nucleus	33.54	38.07
KRH37335	Soybean	cytosol, nucleus	33.33	37.25
VIT_11s0052g00030.t01	Wine grape	plastid	34.75	36.91
Solyc08g074330.1.1	Tomato	plastid	16.77	36.56
HORVU1Hr1G055480.1	Barley	plastid	36.57	36.06
Solyc05g043210.1.1	Tomato	plastid	18.38	35.97
Solyc07g008490.2.1	Tomato	nucleus	32.93	33.82
PGSC0003DMT400076105	Potato	plastid	31.31	33.55
GSMUA_Achr8P14980_001	Banana	cytosol	37.58	33.21
GSMUA_Achr11P...	Banana	mitochondrion	37.78	32.64
Bra019133.1-P	Field mustard	cytosol	25.66	31.91
CDY42768	Canola	cytosol	30.91	31.03
AT4G26000.1	Thale cress	cytosol	30.91	30.91
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	29.9	30.83
CDX92741	Canola	cytosol	30.71	30.83
CDY65294	Canola	cytosol	26.46	29.84
CDX89376	Canola	cytosol	25.45	29.65
Bra013940.1-P	Field mustard	cytosol	25.25	29.41
HORVU1Hr1G036300.1	Barley	cytosol	10.51	28.57
Solyc05g042180.1.1	Tomato	plastid	15.35	27.84
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	17.98	27.81
PGSC0003DMT400046406	Potato	cytosol	32.93	27.63
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	27.68	25.28
HORVU4Hr1G049680.1	Barley	nucleus	17.58	14.95
HORVU1Hr1G036280.1	Barley	cytosol	11.52	13.9
HORVU5Hr1G121900.1	Barley	nucleus	14.75	11.55
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	14.55	11.39
HORVU1Hr1G043680.7	Barley	nucleus	16.57	10.06
HORVU7Hr1G082230.1	Barley	nucleus	12.32	9.74
HORVU3Hr1G057270.16	Barley	plastid	14.75	9.41
HORVU5Hr1G075110.3	Barley	mitochondrion	11.92	9.16

Protein Annotations

EnsemblPlants:HORVU6Hr1G014510.1	EnsemblPlantsGene:HORVU6Hr1G014510	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF169	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI000B479E68	UniProt:A0A287TE94	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr6H:+:30843312..30848157

Molecular Weight (calculated)

54192.2 Da

IEP (calculated)

5.371

GRAVY (calculated)

-0.391

Length

495 amino acids

Sequence
(BLAST)

001: PFGSARSCPH SLSPRSCPSP KPSSMATAAP PPEEFARQAM AYVAEEEEED PEEVEAWVSS DSEPDEHPAL KRLDPYPDSE PEQPHQPPPP PPAPTNSAFE
101: VAEEGKKATP WPGFPGASVF RLVVAGDKVG GLIGRRGEVI KRLCEVTRAR VRVLDPTDGV SSRIVLISAT EETQAELAPA MDAAVRIFKH VNDIEGINPD
201: FTLPVSGPEI CSARLLVPKA QGRHLIGKQG TTIQLMQEST GTTIRIIDKD ELLSNQMVEE RIVEIRGASL KVLNALKSVL GLLRRFLVDH SVLHLFERKN
301: EEVAEVQNSS KENQVTNDYA LVVNQDLLLS DSRSHHNPNG GRYLSYGHDP SVCDPYSRDI RRPTVSLISK ITQTMRIPLP QAEEIIGVRG QTIAHIRSVS
401: GAMVVLEETG NYLDEVLVSI EGTSSQVQTA HQLIQEVLLG NGEPLPPWSR RYGNPDAGPV RLPFALHGSP ASPECALPLY REYRSSSAAY HGYRL

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.