Factsheet for VIT_11s0052g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19104	Soybean	nucleus	70.17	75.0
KRH02776	Soybean	nucleus	69.53	74.31
KRH12329	Soybean	cytosol, nucleus	67.6	71.27
KRH37335	Soybean	cytosol, nucleus	66.09	69.53
Solyc07g008490.2.1	Tomato	nucleus	62.23	60.17
Bra019133.1-P	Field mustard	cytosol	48.5	56.78
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	53.0	56.01
EER94472	Sorghum	cytosol	53.86	55.53
TraesCS1D01G218700.1	Wheat	cytosol	53.43	55.33
TraesCS1B01G229900.1	Wheat	cytosol	53.22	55.23
Zm00001d029973_P001	Maize	plasma membrane	53.0	55.13
TraesCS1A01G216900.1	Wheat	cytosol	53.22	55.11
AT4G26000.1	Thale cress	cytosol	58.37	54.95
CDY42768	Canola	cytosol	57.3	54.16
Os10t0564000-01	Rice	cytosol	53.22	54.15
CDX92741	Canola	cytosol	56.65	53.55
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	55.15	53.54
GSMUA_Achr8P14980_001	Banana	cytosol	61.37	51.07
HORVU1Hr1G055480.1	Barley	plastid	53.86	50.0
PGSC0003DMT400046406	Potato	cytosol	62.66	49.49
GSMUA_Achr11P...	Banana	mitochondrion	58.8	47.82
Bra013940.1-P	Field mustard	cytosol	41.85	45.88
CDX89376	Canola	cytosol	41.85	45.88
CDY65294	Canola	cytosol	41.85	44.42
VIT_07s0141g00800.t01	Wine grape	cytosol	36.91	39.72
Os02t0125500-00	Rice	cytosol	35.41	37.59
TraesCS6B01G113100.1	Wheat	cytosol	37.55	37.47
TraesCS6A01G084000.1	Wheat	cytosol	37.12	36.12
VIT_14s0081g00440.t01	Wine grape	cytosol	39.48	36.01
Zm00001d015093_P001	Maize	cytosol	35.19	35.04
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	36.91	34.75
KXG29352	Sorghum	cytosol	37.55	33.91
VIT_15s0021g01940.t01	Wine grape	nucleus	18.03	24.28
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	10.3	20.34
VIT_09s0002g00070.t01	Wine grape	mitochondrion	5.58	20.31
VIT_14s0108g01040.t01	Wine grape	nucleus	22.1	18.8
VIT_01s0026g02650.t01	Wine grape	nucleus	21.24	17.31
VIT_14s0006g00030.t01	Wine grape	cytosol	10.3	16.96
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	20.82	14.35
VIT_18s0001g08280.t01	Wine grape	cytosol	20.82	13.84
VIT_03s0038g00420.t01	Wine grape	plastid	19.1	13.73
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	18.24	13.64
VIT_16s0098g01660.t01	Wine grape	nucleus	16.74	11.8
VIT_09s0054g00450.t01	Wine grape	plastid	17.81	11.79

Protein Annotations

EntrezGene:100261643	wikigene:100261643	Gene3D:3.30.1370.10	MapMan:35.1	ProteinID:CCB44688	ProteinID:CCB44688.1
UniProt:F6GXK2	EMBL:FN594964	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299
GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0048367	GO:GO:0048467
GO:GO:0048577	GO:GO:0048579	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
EntrezGene:LOC100261643	wikigene:LOC100261643	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132
SMART:SM00322	SUPFAM:SSF54791	TIGR:TC53554	UniParc:UPI00015CC6E0	ArrayExpress:VIT_11s0052g00030	EnsemblPlantsGene:VIT_11s0052g00030
EnsemblPlants:VIT_11s0052g00030.t01	unigene:Vvi.6769	RefSeq:XP_002264417	RefSeq:XP_002264417.1	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:16926514..16932856

Molecular Weight (calculated)

49375.2 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.287

Length

466 amino acids

Sequence
(BLAST)

001: MATTGTTEPA PVNGAAQSPG SDPKTELSET PLSASNAATA ESEQAPSENL ESESTAPPET EAPAPASEKK WPGWPGDCVF RLIVPVLKVG SIIGRKGELI
101: KKMCEETRAR IRVLDGAVGT SDRIVLISGR EEPEAPLSPA MDAVIRVFKR VTGLSESEGD GKAYGAAGVA FCSIRLLVAS TQAINLIGKQ GSLIKSIQES
201: TGASVRVLSG DEVPFYAAAD ERIVELQGEA LKVQKALEAV VGHLRKFLVD HSVLPLFERT YNATISQDRQ SDTWADKSLL HGTSQTGMGS DYSLPAKRES
301: LYLDRETQME HSGLPMYGQE HGLSGIRSSG LGRAGAPIVT QIAQTMQIPL SYAEDIIGIG GANIAYIRRT SGAILTVQES RGLPDEITVE IKGTSSQVQT
401: AQQLIQEFIS NHKEPVPSSY GKMDSGLRSS YSQLGNTSYS SSSLSSQPYG GGYGSSGVGG YSSYRL

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.