Factsheet for Bra019133.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42768	Canola	cytosol	99.0	79.92
CDX92741	Canola	cytosol	98.24	79.31
AT4G26000.1	Thale cress	cytosol	84.42	67.88
Bra013940.1-P	Field mustard	cytosol	56.03	52.47
KRH02776	Soybean	nucleus	55.03	50.23
KRH19104	Soybean	nucleus	54.27	49.54
VIT_11s0052g00030.t01	Wine grape	plastid	56.78	48.5
KRH12329	Soybean	cytosol, nucleus	53.52	48.19
KRH37335	Soybean	cytosol, nucleus	53.02	47.63
Solyc07g008490.2.1	Tomato	nucleus	50.5	41.7
TraesCS1B01G229900.1	Wheat	cytosol	45.23	40.09
TraesCS1D01G218700.1	Wheat	cytosol	44.97	39.78
TraesCS1A01G216900.1	Wheat	cytosol	44.72	39.56
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	43.47	39.23
Zm00001d029973_P001	Maize	plasma membrane	43.22	38.39
EER94472	Sorghum	cytosol	43.47	38.27
Os10t0564000-01	Rice	cytosol	43.22	37.55
HORVU1Hr1G055480.1	Barley	plastid	45.48	36.06
PGSC0003DMT400046406	Potato	cytosol	50.75	34.24
GSMUA_Achr8P14980_001	Banana	cytosol	47.49	33.75
Bra001111.1-P	Field mustard	cytosol	32.91	33.59
GSMUA_Achr11P...	Banana	mitochondrion	47.99	33.33
TraesCS6B01G113100.1	Wheat	cytosol	31.91	27.19
TraesCS6A01G084000.1	Wheat	cytosol	32.66	27.14
Os02t0125500-00	Rice	cytosol	29.65	26.88
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	31.91	25.66
Zm00001d015093_P001	Maize	cytosol	29.65	25.21
KXG29352	Sorghum	cytosol	32.66	25.19
Bra024789.1-P	Field mustard	cytosol	13.57	14.36
Bra008709.1-P	Field mustard	nucleus	17.59	13.54
Bra013302.1-P	Field mustard	nucleus	19.6	13.31
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.57	13.2
Bra026852.1-P	Field mustard	nucleus	15.83	12.99
Bra006294.1-P	Field mustard	nucleus	18.59	12.33
Bra025032.1-P	Field mustard	nucleus	19.6	12.07
Bra030226.1-P	Field mustard	plastid	16.83	10.81
Bra014290.1-P	Field mustard	plastid	15.08	10.33
Bra038508.1-P	Field mustard	cytosol, plastid	16.33	10.17
Bra022624.1-P	Field mustard	nucleus	15.58	9.38
Bra003085.1-P	Field mustard	nucleus	14.32	8.92
Bra024292.1-P	Field mustard	nucleus	17.59	8.17

Protein Annotations

EnsemblPlants:Bra019133.1	EnsemblPlants:Bra019133.1-P	EnsemblPlantsGene:Bra019133	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002541157	UniProt:M4DRJ0	MapMan:35.1	:

Description

AT4G26000 (E=5e-182) PEP | PEP (PEPPER); RNA binding / nucleic acid binding

Coordinates

chrA03:+:26159151..26161015

Molecular Weight (calculated)

43176.7 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.262

Length

398 amino acids

Sequence
(BLAST)

001: MCEETRARIK VLDGPTTTPD RIVMISAKEE PEAYMSPAME AVVRVFRRVS GLPDSDDDED LQNAGVAFSS VRLLVASSQA INLIGKQGSS IKSIVENSGA
101: SVRILSDEDT PFYAAQDERI VDLQGEALKI VKALEGVVGH LRKFLVDHSV VPLFEKQYLA RVSQVRQEEP LANNKSALHA ALSNAIESDL LARREALFLE
201: RDTRVESFVQ PSGASIYSQD PALAARHSPG LARVSAAFVT QVSQTMQIPF SYAEDIIGLE GANIAFIRRR SGATITIQES PHPDQITVEI KGTSSQVQTA
301: QQLIQDFISN HKEPASVSGG YARVDTGYVP AYPPQLSNLQ EPLASSYMGT ETVQYRPTAY SQLAGPSASA YTPSLNGQTY GTEYRPASDA GGYNTYNL

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.