Factsheet for Bra024292.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84522	Canola	nucleus	84.25	97.44
AT5G64390.3	Thale cress	nucleus	77.48	76.67
VIT_03s0038g00420.t01	Wine grape	plastid	36.41	48.15
KRH49838	Soybean	plastid	32.09	46.61
KRH42077	Soybean	plastid	31.51	46.0
KRH21739	Soybean	plastid	37.81	45.31
PGSC0003DMT400083772	Potato	plastid	32.21	42.92
Solyc01g106020.2.1	Tomato	plastid	31.97	42.41
KRH10613	Soybean	plastid	35.71	42.09
Bra014290.1-P	Field mustard	plastid	20.07	29.6
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.89	29.1
Bra013302.1-P	Field mustard	nucleus	19.72	28.84
Bra038508.1-P	Field mustard	cytosol, plastid	21.47	28.8
Bra008709.1-P	Field mustard	nucleus	17.27	28.63
Bra030226.1-P	Field mustard	plastid	20.54	28.39
Bra026852.1-P	Field mustard	nucleus	15.4	27.22
Bra025032.1-P	Field mustard	nucleus	20.42	27.09
Os07t0439100-01	Rice	cytosol	7.23	26.61
Bra003085.1-P	Field mustard	nucleus	19.72	26.45
Bra024789.1-P	Field mustard	cytosol	11.55	26.33
Bra022624.1-P	Field mustard	nucleus	20.19	26.17
OQU88922	Sorghum	nucleus, peroxisome, plastid	18.79	25.0
Bra006294.1-P	Field mustard	nucleus	17.39	24.83
Zm00001d019538_P002	Maize	plastid	18.09	22.96
Bra001111.1-P	Field mustard	cytosol	8.87	19.49
Bra013940.1-P	Field mustard	cytosol	8.87	17.88
Bra019133.1-P	Field mustard	cytosol	8.17	17.59

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EnsemblPlantsGene:Bra024292	EnsemblPlants:Bra024292.1	EnsemblPlants:Bra024292.1-P
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0010093	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	UniProt:M4E688	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF173
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000253F400	SEG:seg	:	:

Description

AT5G64390 (E=0.0) HEN4 | HEN4 (HUA ENHANCER 4); RNA binding / nucleic acid binding

Coordinates

chrA06:+:14761281..14765279

Molecular Weight (calculated)

93897.1 Da

IEP (calculated)

8.356

GRAVY (calculated)

-0.472

Length

857 amino acids

Sequence
(BLAST)

001: MERNNYHYST EKRSRAVDPG SGFGSSKRAK THHAQLLSPL VVPVGHASFR LLSPISQVGA VIGKSGSVIK QLQQSTGAKI RVEEPPVGSP DRVITIIAQV
101: DSTSRVKLGV DSNGSTEAER KEEDEVEVSK AQAALIRVFE ILAAEADSST VVCRLLTESS HAGAVIGKGG QMVGRIRKET GCKIAIRTEN LPICADRDDE
201: MVEIEGNVNA VKKALVSVSR CLQDCQDVKK IRTVGNRPFE KETIQESSHR PLETIIQESL LRRSVEDYDY RTRGADMFPR GTLARPSDVI PHDALHHRHI
301: DGVSQGTLRR HIEEDRQDAL LRQIEAERHD ALRRHIDLGP REVLYRPSDG VRGDVFRQHR EVDTSSHDSL GRPYEMVQRD AIRGMQFERD AFGRTIETIP
401: QETLRRPSGD FLAHRSSTLD THPHSITTSA LMTNAVTLKP HQPEVEAENQ DVVFKILCSI ENAGGVIGTG GKVIRTLHSE SGAFISVGNT IADCEERLIT
501: VTAPESPDRQ SSPAQKAILL VFTRLFELAT KKIVDNGSRM SITARLVVPT SQIGCLLGKG GAVVSEMRKA TGAAIQILKA EQNPKCISEN DQVVQITGEF
601: PNVREAIFHV TSRLRDSLFS KSRKSSVTKS NPTLTTERIH RGQSDNPLSV GSHQSFGHPP TISTSLNRRS DDSFLSGSQL SANYLRPAGT DPYTRPEDPV
701: PDRFNPSGGY SPNFGRRSTM DHNDISHHLT ETASRMWASP PPAALRGLSD ANGGLSSARP GHVLGSGHKS AIVTNTTVEI RVPENAISFV YGEHGNNLEQ
801: LRQISGARVI VHEPQLGTSD RIIVISGTPD QTQSAQNLLH AFILKGETLL SKRYNLN

Best Arabidopsis Sequence Match ( AT5G64390.1 )
(BLAST)

001: MERNSVKFHA EKRSGAFDPG SGFGSSKRVK THHTQLLSAL VVPVGHAAFR LLCPLSHVGA VIGKSGNVIK QLQQSTGAKI RVEEPPSGSP DRVITIIAQA
101: DSKSRVKLGA NNNGNAEGEK KEEEVEVSKA QGALIKVFEL LAAEADSDTV VCRLLTESSH AGAVIGKGGQ MVGSIRKETG CKISIRIENL PICADTDDEM
201: VEVEGNAIAV KKALVSISRC LQNCQSIDKV RMVGNRPLEK EFQASLHRPI ETIIQESLPR SVEVNPYDYR LRNDEIFPRG TVARANDVIP HDTLHLRRIE
301: AVPQGALRMH IEADRQDVLR RHVEADRQDA LRRRIDVVPQ ETLYMPSDVL RGDCFRQHRE RDDSHDSLHR PFEMVPRDAM GMPFESFPRD AYGRPIETMT
401: QETLRGQSAD YLAHRYSTLD THPHSFTTSA SMANTATMKP PPSEVEVGNQ DVVFKILCST ENAGGVIGTG GKVVRMLHSE TGAFINVGNT LDDCEERLIA
501: VTASENPECQ SSPAQKAIML IFSRLFELAT NKILDNGPRS SITARLVVPT SQIGCVLGKG GVIVSEMRKT TGAAIQILKV EQNPKCISEN DQVVQITGEF
601: PNVREAIFHI TSRLRDSVFS NSMKNSLAKS SSALTTERFY DRQSDNPLSI GSHQSVSNPA TNSSSLHRRS EDSFLSGSHS SVNYSRSVGT DPYIRPEDPF
701: PDRFNPSAGY SHNFGRRFTM DHSDNSHHLT EAPSRLWASP PPAAPRGLSD ASGGLSSARA GHVLGSGHKS AIVTNTTVEI RVPANAMSFV YGEQGYNLEQ
801: LRQISGARVI IHEPPLGTSD RIIVISGTPD QTQAAQNLLH AFILTGETSL SKKYNLN

Arabidopsis Description

HEN4RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KDM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.