Factsheet for PGSC0003DMT400083772

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106020.2.1	Tomato	plastid	97.36	96.9
VIT_03s0038g00420.t01	Wine grape	plastid	54.12	53.7
KRH49838	Soybean	plastid	47.43	51.69
KRH42077	Soybean	plastid	46.97	51.45
KRH21739	Soybean	plastid	50.7	45.59
KRH10613	Soybean	plastid	49.14	43.47
CDX84522	Canola	nucleus	42.92	37.25
PGSC0003DMT400041750	Potato	plastid	33.44	35.07
Bra024292.1-P	Field mustard	nucleus	42.92	32.21
PGSC0003DMT400074198	Potato	plastid	22.08	31.98
AT5G64390.3	Thale cress	nucleus	42.3	31.41
PGSC0003DMT400087680	Potato	plastid	12.13	31.33
PGSC0003DMT400012623	Potato	nucleus, plastid	30.17	28.74
AT5G09560.1	Thale cress	cytosol	25.82	27.67
PGSC0003DMT400047374	Potato	nucleus	21.93	26.45
PGSC0003DMT400064701	Potato	nucleus	22.24	25.77
PGSC0003DMT400003371	Potato	nucleus	21.46	25.51
PGSC0003DMT400047665	Potato	nucleus	26.91	25.22
PGSC0003DMT400076798	Potato	nucleus	23.95	24.84
OQU88922	Sorghum	nucleus, peroxisome, plastid	24.73	24.69
Zm00001d019538_P002	Maize	plastid	24.26	23.11
Os07t0439100-01	Rice	cytosol	8.24	22.75
PGSC0003DMT400038635	Potato	cytosol	4.67	20.55
PGSC0003DMT400066836	Potato	nucleus, plastid	12.29	17.75
PGSC0003DMT400051262	Potato	nucleus	13.22	16.93
PGSC0003DMT400051668	Potato	cytosol	13.06	16.41
PGSC0003DMT400076105	Potato	plastid	11.51	16.02
PGSC0003DMT400046406	Potato	cytosol	13.06	14.24

Protein Annotations

EntrezGene:102588041	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M1D738	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400033575	PGSC:PGSC0003DMG400033575	EnsemblPlants:PGSC0003DMT400083772	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF173	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002949FF7	RefSeq:XP_006351720.1
SEG:seg	:	:	:	:	:

Description

Poly(RC)-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033575]

Coordinates

chr1:+:82674057..82681099

Molecular Weight (calculated)

68515.1 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.121

Length

643 amino acids

Sequence
(BLAST)

001: MHENSVAASV ANSSTAAGVP AVVNNSHLPP QPLPRRVVFR LLCHASRVGG VIGKSGSIIR QLQQDTSAKI HVDVSAPNDH NRLIVVVAPA SVNKRIRLLG
101: PIGDNQRNEE IDEIEVSAAQ EALVRVFERV IEVTAENNGL VLGVENVVSC RLLVKGNQVG ALMGKGGKVI DTIRRENGCR IKVLTSGKMP SCASPNDEIV
201: EIEGDILAVK KALVAVSRRL QDCFSVERTR TVDNAPIELD SEQTLPPEPI DLPAQRSSMS QPITTSSFSG ASGCHSVPLE ADKFSSIDSK MPLQEVAFRI
301: LCTNDKVGAI IGKAGTIVRA LQNDSGASIA VGPNVAECNE RMITITALEN LELRKSPAQT AVVLVFDRIL DAGSGMNLGT RSLITFRLVV ANSQVGCLLG
401: KGGAIISDIR KETGTSIRIF RGDQVPKCVS DNDEVVQIAG EFVNVQDALR NVTGRLRDNL LAAKVSNGGI SRNSSPLTSE SSPSGQMKEP PFGFHRSSGV
501: SHGNNQHPEL TRSINNLVLS NKIDHPPSPG LWSSQTRPAV NQRGAFDVSK GSNSVKGVIE LGSGSRSAIV TNTTVKIMVP ENIMSCVYGE DGSNLTRLRQ
601: ISGARVMVHE PRPGTTDRII VISGTPDETQ AAQSLLQAFI LTE

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.