Factsheet for Zm00001d019538_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88922	Sorghum	nucleus, peroxisome, plastid	84.0	88.04
Os07t0439100-01	Rice	cytosol	15.7	45.49
VIT_03s0038g00420.t01	Wine grape	plastid	25.04	26.08
KRH42077	Soybean	plastid	22.67	26.06
KRH49838	Soybean	plastid	22.67	25.93
PGSC0003DMT400041750	Potato	plastid	22.37	24.63
PGSC0003DMT400083772	Potato	plastid	23.11	24.26
Solyc01g106020.2.1	Tomato	plastid	22.96	23.99
Solyc11g010840.1.1	Tomato	plastid	21.63	23.82
KRH39475	Soybean	plastid	21.48	23.73
Zm00001d029328_P002	Maize	nucleus	18.81	23.48
KRH21739	Soybean	plastid	24.0	22.66
CDX89490	Canola	cytosol	20.44	22.29
Bra030226.1-P	Field mustard	plastid	20.15	21.94
CDY25609	Canola	cytosol	20.15	21.9
CDY13742	Canola	mitochondrion	20.15	21.73
KRH10613	Soybean	plastid	23.26	21.6
AT2G22600.1	Thale cress	mitochondrion	20.15	21.52
Bra038508.1-P	Field mustard	cytosol, plastid	20.3	21.44
KRH74462	Soybean	nucleus	19.56	21.43
Zm00001d024270_P001	Maize	nucleus	19.85	21.2
Zm00001d006055_P002	Maize	plastid	19.41	20.99
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	19.41	20.76
CDX84522	Canola	nucleus	22.67	20.65
Zm00001d049390_P001	Maize	nucleus	19.11	20.44
AT5G09560.1	Thale cress	cytosol	18.07	20.33
Zm00001d009014_P004	Maize	nucleus	19.7	18.87
Zm00001d046033_P001	Maize	nucleus	18.22	18.44
Bra024292.1-P	Field mustard	nucleus	22.96	18.09
AT5G64390.3	Thale cress	nucleus	22.52	17.55
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	11.26	17.23
Zm00001d029973_P001	Maize	plasma membrane	11.11	16.74
Zm00001d037055_P003	Maize	nucleus	17.63	16.08
Zm00001d013963_P002	Maize	nucleus	17.93	14.83
Zm00001d003290_P002	Maize	mitochondrion	4.89	14.41
Zm00001d030968_P006	Maize	extracellular	10.37	13.78
Zm00001d015093_P001	Maize	cytosol	9.33	13.46
Zm00001d032597_P006	Maize	golgi, plasma membrane	18.67	12.78
Zm00001d014180_P004	Maize	cytosol	11.56	12.06
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	10.37	10.65
Zm00001d010815_P001	Maize	mitochondrion	5.48	10.57

Protein Annotations

EnsemblPlants:Zm00001d019538_P002	EnsemblPlants:Zm00001d019538_T002	EnsemblPlantsGene:Zm00001d019538	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF146	PFAM:PF00013	PFscan:PS50084	ProteinID:ONM53139.1	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0008440276	UniProt:A0A1D6HYA3	MapMan:35.1	:

Description

RNA-binding KH domain-containing protein

Coordinates

chr7:-:41108739..41119853

Molecular Weight (calculated)

71922.5 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.069

Length

675 amino acids

Sequence
(BLAST)

001: MTHCFSSPLA LPRAVLSLRR KPHNHRPEMA AVKPQPHFSP HATFSAPDAG PADTGFAVFR LLLPSSFSDA DTMRLYAAVN PLRRRTATLQ VRVEPLDPAS
101: AGGRVVAAIV GPTVPVRRVE ASSSSAEPLA LSPAQEALVA VIDTEGALCC AVEKEARGKA RPGCITCLLL VDADRLEAST GRGVMERIAL EAGADVRVAM
201: WEEGAQPPRG QPLEEVVEIT GDRTAVRKAL VALSSFLQGD LPIGNSTTYV KKEGSILPWA SSEVPGPNMG ASCSEASTEF AQGSVAKTHC PEGNTGDAQS
301: KTLQQVSFRL LLPTYLAGGL IGKKGLIIKG IEVETGACID VGAPVAGCKE RVITICALES PDSEYHIVQS ALLLIFDRMM EMETNTHSTF EKASQFLVRV
401: LVLKNQFGCL VGLGGSIIKE MVNTTGARIQ ILDDTEIPAC ASTFELVVQI TGELMNIRNA LSLVFWKLRN HIFSNETDYN NSHISSSEIA ESNATSQANI
501: YSTIQYSVDN GHKVDHRSPL SYGVDSVEKS FSDLELSSSE IQKPDNGNGV RINNSDSGIQ NPSDWNGIVT NNLNDGIISS DENNLVRGAE HAAITRITYE
601: TAVSGSILTL VYGDNGSNLA KLTEVSGADI IVYNPPSEGN EAMIVVSGPP DQAQSAQRLL VELILQGHPG TCLSA

Best Arabidopsis Sequence Match ( AT5G64390.1 )
(BLAST)

001: MERNSVKFHA EKRSGAFDPG SGFGSSKRVK THHTQLLSAL VVPVGHAAFR LLCPLSHVGA VIGKSGNVIK QLQQSTGAKI RVEEPPSGSP DRVITIIAQA
101: DSKSRVKLGA NNNGNAEGEK KEEEVEVSKA QGALIKVFEL LAAEADSDTV VCRLLTESSH AGAVIGKGGQ MVGSIRKETG CKISIRIENL PICADTDDEM
201: VEVEGNAIAV KKALVSISRC LQNCQSIDKV RMVGNRPLEK EFQASLHRPI ETIIQESLPR SVEVNPYDYR LRNDEIFPRG TVARANDVIP HDTLHLRRIE
301: AVPQGALRMH IEADRQDVLR RHVEADRQDA LRRRIDVVPQ ETLYMPSDVL RGDCFRQHRE RDDSHDSLHR PFEMVPRDAM GMPFESFPRD AYGRPIETMT
401: QETLRGQSAD YLAHRYSTLD THPHSFTTSA SMANTATMKP PPSEVEVGNQ DVVFKILCST ENAGGVIGTG GKVVRMLHSE TGAFINVGNT LDDCEERLIA
501: VTASENPECQ SSPAQKAIML IFSRLFELAT NKILDNGPRS SITARLVVPT SQIGCVLGKG GVIVSEMRKT TGAAIQILKV EQNPKCISEN DQVVQITGEF
601: PNVREAIFHI TSRLRDSVFS NSMKNSLAKS SSALTTERFY DRQSDNPLSI GSHQSVSNPA TNSSSLHRRS EDSFLSGSHS SVNYSRSVGT DPYIRPEDPF
701: PDRFNPSAGY SHNFGRRFTM DHSDNSHHLT EAPSRLWASP PPAAPRGLSD ASGGLSSARA GHVLGSGHKS AIVTNTTVEI RVPANAMSFV YGEQGYNLEQ
801: LRQISGARVI IHEPPLGTSD RIIVISGTPD QTQAAQNLLH AFILTGETSL SKKYNLN

Arabidopsis Description

HEN4RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KDM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.