CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25609	Canola	cytosol	95.15	94.85
CDY13742	Canola	mitochondrion	78.19	77.32
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	78.19	76.7
AT2G22600.1	Thale cress	mitochondrion	73.83	72.31
KRH39475	Soybean	plastid	31.83	32.24
KRH74462	Soybean	nucleus	30.53	30.68
Solyc11g010840.1.1	Tomato	plastid	27.63	27.9
PGSC0003DMT400041750	Potato	plastid	27.46	27.73
CDY52947	Canola	plastid	24.23	26.04
CDY46555	Canola	plastid	24.07	25.65
CDX99471	Canola	nucleus	8.56	24.65
CDY60930	Canola	nucleus	20.52	23.87
CDX99470	Canola	nucleus	10.18	23.25
CDX84522	Canola	nucleus	27.79	23.21
CDX69536	Canola	nucleus	19.87	23.12
CDX78846	Canola	nucleus	20.52	22.13
CDX81615	Canola	cytosol	16.32	22.0
CDX70604	Canola	nucleus	20.36	21.72
CDY33769	Canola	nucleus	16.96	21.65
CDY39336	Canola	mitochondrion	16.48	21.56
CDY49107	Canola	nucleus	16.32	21.26
CDX78623	Canola	nucleus	20.19	20.83
CDX77643	Canola	nucleus	21.49	20.81
OQU88922	Sorghum	nucleus, peroxisome, plastid	21.65	20.81
CDY33460	Canola	nucleus	21.49	20.75
CDY03018	Canola	nucleus	15.67	20.73
Zm00001d019538_P002	Maize	plastid	22.29	20.44
CDY45180	Canola	cytosol	13.89	20.33
CDY56908	Canola	nucleus	20.03	19.5
CDY49453	Canola	nucleus	19.87	19.16
CDX96185	Canola	nucleus	19.06	18.41
CDY27030	Canola	nucleus	19.55	18.2
Os07t0439100-01	Rice	cytosol	6.62	17.6
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	12.12	15.62
CDX92741	Canola	cytosol	12.44	15.62
CDY42768	Canola	cytosol	12.44	15.62
CDX89376	Canola	cytosol	10.5	15.29
CDY65294	Canola	cytosol	10.82	15.26
CDY51849	Canola	cytosol	2.26	13.21
CDY40663	Canola	cytosol	10.99	12.08
CDX74180	Canola	cytosol	10.99	12.08
CDY64706	Canola	nucleus	7.59	11.63

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078DJX4	EnsemblPlants:CDX89490	ProteinID:CDX89490
ProteinID:CDX89490.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00149755001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF160	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EEF992	SEG:seg

Description

BnaC04g35090D

Coordinates

chrLK031859:+:337809..340805

Molecular Weight (calculated)

66173.2 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.072

Length

619 amino acids

Sequence
(BLAST)

001: MNNLSAATTA VSNQNQRQQR RAIIHVLPDE VALRVVCHAS VIGGIIGSNG YVVSTLRRET GTKIHCESPV NGSDHWVVFI VGSTAVNKSF LLTDRVGGFA
101: AGEHEGWVTC EVSAAQMALI RVLERSWAVL AAKDSCGVVE GDDKEAYCGI LADRSQIGAV LGLGGKSVEW MRRNSGAMIR VLPPPSCGTN SDELIQITGD
201: VLAVKKALVM VSNFLQNSPP LNGYPPPLCS KAYDSSTEDP HSEFLPSLRS SLPNASETAA SNNTHTPSRN RFQDSIDTYR KVVFKLICTS VAAGGIIGRH
301: GTIIRAMQNE AGASISIGAP LKASGERVVT ITARESLDSG YSPAQKALGL VFARSVEIDV GKSLFPGALV KTKLLVPLQF ANDFVGNREA VTVTGVDVHI
401: PVGSQILDCL SENELVIEIM GEYKHVQKAL CQVSSKLREN LLPKKAVEEV RARVSNPYNL QPSQQNTGRG DSLSVLDGEQ DLNMLRISTE VMKSIDCTHT
501: EANEVNGFIH PTSLLENGLT QGMKQLQLSS NGYLSSLPPR RNKGVSLRNV TLELAVEKDA LAALCGRDGA GLDNLQQISG ARVDVKDSLT GVEATVLLSG
601: NPEQTQTAMS LFISILADP

Best Arabidopsis Sequence Match ( AT2G22600.1 )
(BLAST)

001: MNNRRGVTTA VSKRRPVIHV LPDETAIRVV CHASVIGGII GSNGYVVSKL RRETGTKIHC ESPVNGSDHW VVFIVGSTAV NQSILLTDRV GEFSGGEHED
101: WVTCEVSAAQ TALIRVLERS WVVLAAKDGG GVVDGEDEEA YCGILADRNQ IGAVLGLGGK NVEWMRRNSG AMIRVLPPPI CGTKNDELIQ ITGDVLAVKK
201: ALVMVSSYIQ NNAPLNGYPP PLSIKGYESL STDGNSEDPH SEFFPNLRSS SLSNATEIVA SNRHLPYDGG NSTERKVVFK IIFTSVVAGG IIGKQGTIIR
301: ALQNETGASI SVGAPLKVSG ERVVTVSARE NLESRYSHAQ NALALVFARS VEIDVEKGLR PGLHNGAIVK TKLLVPSHFA NSFNGNGNRE AIIATGADVH
401: ISVGNQVLEW ISENEVVIEI KGEYSHVQKA LTHVSSKLRE NLLPKKVLGE MRARVSNPYE SAGGRSQIYN LQPSQQDASR GDSLSVSAAV PDLKMVRSGA
501: EVLKSNSVMH TEVLKEVDEL NDFTLPQSLL EEDLTQGMKQ LQMSSNGDVS SLPPRSKGVS VRKITLELAV EKDALGSLYG RDGTGVDNLQ QISGANVDVK
601: DPTGTEATVL ISGNPEQART AMSLIESILT DQ

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IJK5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.