CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13742	Canola	mitochondrion	94.77	95.53
CDX89490	Canola	cytosol	76.7	78.19
CDY25609	Canola	cytosol	76.86	78.1
AT2G22600.1	Thale cress	mitochondrion	72.74	72.63
KRH39475	Soybean	plastid	32.01	33.06
KRH74462	Soybean	nucleus	30.59	31.33
Solyc11g010840.1.1	Tomato	plastid	27.26	28.06
PGSC0003DMT400041750	Potato	plastid	27.1	27.9
CDY52947	Canola	plastid	25.2	27.6
CDY46555	Canola	plastid	25.2	27.37
CDX99471	Canola	nucleus	8.56	25.12
CDX84522	Canola	nucleus	28.53	24.29
CDY60930	Canola	nucleus	20.29	24.06
CDX69536	Canola	nucleus	19.49	23.12
CDX81615	Canola	cytosol	16.8	23.09
CDY33769	Canola	nucleus	17.59	22.89
CDY39336	Canola	mitochondrion	16.96	22.62
CDX78846	Canola	nucleus	20.29	22.3
CDY03018	Canola	nucleus	16.48	22.22
CDY49107	Canola	nucleus	16.48	21.89
CDX99470	Canola	nucleus	9.35	21.77
CDY45180	Canola	cytosol	14.58	21.75
CDX70604	Canola	nucleus	19.97	21.72
CDX78623	Canola	nucleus	19.81	20.83
CDX77643	Canola	nucleus	21.08	20.81
CDY33460	Canola	nucleus	21.08	20.75
OQU88922	Sorghum	nucleus, peroxisome, plastid	20.92	20.5
CDY56908	Canola	nucleus	20.44	20.28
CDY49453	Canola	nucleus	20.29	19.94
CDX96185	Canola	nucleus	19.97	19.66
Zm00001d019538_P002	Maize	plastid	20.76	19.41
CDY27030	Canola	nucleus	20.44	19.4
Os07t0439100-01	Rice	cytosol	6.34	17.17
CDX92741	Canola	cytosol	12.52	16.02
CDY42768	Canola	cytosol	12.36	15.82
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	11.57	15.21
CDX89376	Canola	cytosol	9.83	14.59
CDY65294	Canola	cytosol	9.98	14.35
CDY51849	Canola	cytosol	2.22	13.21
CDY64706	Canola	nucleus	7.77	12.13
CDX74180	Canola	cytosol	10.78	12.08
CDY40663	Canola	cytosol	10.78	12.08

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078CLI9	EnsemblPlants:CDX76904	ProteinID:CDX76904
ProteinID:CDX76904.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00127427001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF160	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EF2B0D	SEG:seg

Description

BnaC08g34900D

Coordinates

chrLK031808:-:1972560..1975704

Molecular Weight (calculated)

67496.2 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.283

Length

631 amino acids

Sequence
(BLAST)

001: MNNRRGTTAS ASNPNRRLQR RQVIHVLPDE TALRVVCHAS VIGGIIGSNG RVVSNLRRET GAKIHCESPT SGSDHSVVFI VGSNAVDKSF LLTDRVGDYS
101: SGGEREGWVT CEVSAAQAAL IRVLERSWAV LAEKDSGGVV AEEEGKEAYC GMLADRSQIG AVLGLGGKNV EWMRRNSGAT IRVLPPPSCG ANSDELIQIT
201: GDVLAVKKAL VMVSTFLQNS PPLNGYPPPL CSKPYDTNGN SEDPHSEFFP NLRSSSSLPN IASDAASTSH SPSPRYEEGN SFQGSKDRDK KVVFKMICTS
301: LAAGGIIGKQ GTIIRALQNE TGASISIGAP LKASGERVVT ISARESLESR FSQAQKALVR VFTRSVEIDV GKGLFPGALV KAKLVVPSQF ANDLIGNKEA
401: NVDVHISVGG QTLDCISENE MVIEIMGEYR HVEKALSHVS SKLRENLLPR KDLEVMRARV GNPYENGEAN YNLQPSQQVR GDSLSVSDGE QDVKMVRSGT
501: EVMKSIGDLM HTEAVNEANG STPPSLLEND LTQGMKQFNL SGNGDISFLP PRRGKGVSLR NVTLELAVEK DALAALYGRD GAGLDNLQQI SGARVDVKDA
601: PTKGETMVLL SGNPEQTRTA MSLIVSILAD H

Best Arabidopsis Sequence Match ( AT2G22600.1 )
(BLAST)

001: MNNRRGVTTA VSKRRPVIHV LPDETAIRVV CHASVIGGII GSNGYVVSKL RRETGTKIHC ESPVNGSDHW VVFIVGSTAV NQSILLTDRV GEFSGGEHED
101: WVTCEVSAAQ TALIRVLERS WVVLAAKDGG GVVDGEDEEA YCGILADRNQ IGAVLGLGGK NVEWMRRNSG AMIRVLPPPI CGTKNDELIQ ITGDVLAVKK
201: ALVMVSSYIQ NNAPLNGYPP PLSIKGYESL STDGNSEDPH SEFFPNLRSS SLSNATEIVA SNRHLPYDGG NSTERKVVFK IIFTSVVAGG IIGKQGTIIR
301: ALQNETGASI SVGAPLKVSG ERVVTVSARE NLESRYSHAQ NALALVFARS VEIDVEKGLR PGLHNGAIVK TKLLVPSHFA NSFNGNGNRE AIIATGADVH
401: ISVGNQVLEW ISENEVVIEI KGEYSHVQKA LTHVSSKLRE NLLPKKVLGE MRARVSNPYE SAGGRSQIYN LQPSQQDASR GDSLSVSAAV PDLKMVRSGA
501: EVLKSNSVMH TEVLKEVDEL NDFTLPQSLL EEDLTQGMKQ LQMSSNGDVS SLPPRSKGVS VRKITLELAV EKDALGSLYG RDGTGVDNLQ QISGANVDVK
601: DPTGTEATVL ISGNPEQART AMSLIESILT DQ

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IJK5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.