CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71815
CDX80910
CDX92648
CDY03428
CDY05002
CDY11025
CDY11283
CDY34301
CDY41170
CDY56997
CDY58906
CDY72512

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	CDX71815	AT3G60360.1	21798944
AT5G53060.1	CDY41170	AT3G60360.1	21798944
AT5G53060.1	CDY56997	AT3G60360.1	21798944
AT5G53060.1	CDY58906	AT3G60360.1	21798944
AT5G53060.1	CDX92648	AT4G24680.1	21798944
AT5G53060.1	CDY03428	AT4G24680.1	21798944
AT5G53060.1	CDY11025	AT4G24680.1	21798944
AT5G53060.1	CDY34301	AT4G24680.1	21798944
AT5G53060.1	CDX80910	AT5G04280.1	21798944
AT5G53060.1	CDY11283	AT5G04280.1	21798944
AT5G53060.1	CDY05002	AT5G06770.1	21798944
AT5G53060.1	CDY72512	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56908	Canola	nucleus	97.66	98.58
Bra003085.1-P	Field mustard	nucleus	97.98	98.44
CDX96185	Canola	nucleus	83.96	84.09
AT5G53060.1	Thale cress	nucleus	83.18	81.9
CDY27030	Canola	nucleus	84.27	81.35
KRH64403	Soybean	nucleus	61.53	61.34
KRH53532	Soybean	nucleus	61.68	61.21
VIT_16s0098g01660.t01	Wine grape	nucleus	59.81	58.09
Solyc03g082980.2.1	Tomato	nucleus	57.32	55.09
PGSC0003DMT400047665	Potato	nucleus	57.48	53.79
GSMUA_Achr2P15270_001	Banana	nucleus	50.0	46.19
HORVU7Hr1G082230.1	Barley	nucleus	44.55	45.69
TraesCS7A01G333800.1	Wheat	nucleus	45.64	43.86
Os06t0342500-01	Rice	cytosol	45.02	43.66
TraesCS7D01G341400.1	Wheat	nucleus	45.33	43.24
KXG20038	Sorghum	nucleus	44.7	42.96
Zm00001d046033_P001	Maize	nucleus	44.24	42.58
TraesCS7B01G245400.2	Wheat	nucleus	45.48	41.13
Zm00001d037055_P003	Maize	nucleus	43.61	37.84
CDY49107	Canola	nucleus	20.56	27.79
CDY39336	Canola	mitochondrion	20.25	27.48
CDY03018	Canola	nucleus	19.94	27.35
CDX81615	Canola	cytosol	19.31	27.02
CDY33769	Canola	nucleus	20.41	27.01
CDX99471	Canola	nucleus	8.88	26.51
CDY60930	Canola	nucleus	21.96	26.5
CDX69536	Canola	nucleus	21.65	26.13
CDY45180	Canola	cytosol	16.67	25.3
CDX99470	Canola	nucleus	10.59	25.09
CDX78846	Canola	nucleus	22.27	24.91
CDX70604	Canola	nucleus	21.34	23.62
CDX77643	Canola	nucleus	23.05	23.16
CDY33460	Canola	nucleus	22.9	22.93
CDX78623	Canola	nucleus	21.34	22.83
CDX84522	Canola	nucleus	25.55	22.13
CDY46555	Canola	plastid	19.94	22.03
CDY52947	Canola	plastid	19.63	21.88
CDY51849	Canola	cytosol	3.43	20.75
CDY13742	Canola	mitochondrion	20.09	20.61
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	19.94	20.29
CDX89490	Canola	cytosol	19.16	19.87
CDY25609	Canola	cytosol	18.38	19.0
CDY64706	Canola	nucleus	9.97	15.84
CDX89376	Canola	cytosol	10.12	15.29
CDY65294	Canola	cytosol	10.12	14.81
CDX92741	Canola	cytosol	10.9	14.2
CDY42768	Canola	cytosol	10.9	14.2
CDY40663	Canola	cytosol	12.31	14.03
CDX74180	Canola	cytosol	12.31	14.03
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	10.44	13.96

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078IK77	UniProt:A0A078IK77	EnsemblPlants:CDY49453
ProteinID:CDY49453	ProteinID:CDY49453.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00093039001	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EF1493
SEG:seg	:	:	:	:	:

Description

BnaA10g06430DBnaA10g06430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK77]

Coordinates

chrLK032834:+:32340..35412

Molecular Weight (calculated)

70082.4 Da

IEP (calculated)

6.321

GRAVY (calculated)

-0.514

Length

642 amino acids

Sequence
(BLAST)

001: MERSRSKRNY HYDQDYDGDS IGRSKPRYNN NYHNFGGGGG NNRYRGGGNA RPSKSHSDTM ATTTYRVLCH DAKAGGVIGK SGSIIKSIRQ HTGAWINVHE
101: LVPGDVERII EISDNRRRDP DGRMPAFSPA QEALFSVHDR ILESEAQYGY GVAPPPEDEE DYGGVRPGGG KVVTRLVVSK VNVGCLLGRG GKIIEQMRIE
201: TKTHIRILPR ETNLPRCVSQ SDEIVQIVGE PAAVRNALGI VASRLRESQH RDRTHFQGRV HSPERLPADD YIPQQRRQSS DRFNHGNFRN NSFSSRQSNY
301: ADEAPAAASG GENVQQPFYT EELVFKILCP VDKIVKVVGE SQGIVDLLQN DVGVDMSVSD PVAGSDEQII TISSEEAPDD PLFPAQEALL HIQTQIVDLI
401: PDKDNHITTK LLVSSRDSGC LEGKAGSVSE ISRLTGASVQ ILARDEMPQC VSINDVVVQI AGEIKAARDA LVELTLRLRS HMCKELSQKE TPPGSTSTTG
501: PLEGVAGVME VASSNNTTQP REGLATAPQY KEGGGSVAKG GESEHRDEVP VTASRMSVAL VTRSTLEIVL PDEVIPKLVT KSRNKLAQVS EWSGATVTLV
601: EDRPEETQNV IRISGTPEQA ERAQSLLQGF VLSSKFVRLF SN

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.