Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04280.1 | CDX76092 | AT3G55460.1 | 21798944 |
| AT5G04280.1 | CDY02941 | AT3G55460.1 | 21798944 |
| AT5G04280.1 | CDX80910 | AT5G04280.1 | 21798944 |
| AT5G04280.1 | CDY11283 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005798.1-P | Field mustard | nucleus | 97.32 | 83.01 |
| CDY11283 | Canola | nucleus | 97.32 | 83.01 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 90.42 | 76.13 |
| VIT_13s0019g05080.t01 | Wine grape | nucleus | 56.32 | 52.88 |
| KRG90774 | Soybean | nucleus | 55.94 | 52.33 |
| KRH35987 | Soybean | nucleus | 55.56 | 50.17 |
| PGSC0003DMT400043581 | Potato | nucleus | 51.72 | 49.82 |
| CDY34132 | Canola | nucleus | 43.3 | 44.31 |
| Solyc11g008210.1.1 | Tomato | nucleus | 49.43 | 43.73 |
| Solyc03g071560.2.1 | Tomato | nucleus | 51.72 | 42.99 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 50.57 | 42.44 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 36.02 | 41.96 |
| Zm00001d033511_P002 | Maize | cytosol, mitochondrion, nucleus | 46.36 | 40.74 |
| PGSC0003DMT400079815 | Potato | nucleus | 48.66 | 39.94 |
| KXG37841 | Sorghum | nucleus | 48.28 | 39.87 |
| Zm00001d013543_P009 | Maize | extracellular, mitochondrion, plasma membrane | 47.13 | 39.55 |
| Os03t0681900-01 | Rice | nucleus | 45.21 | 38.31 |
| OQU88590 | Sorghum | nucleus | 44.06 | 38.21 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 46.36 | 38.17 |
| TraesCS4D01G023800.2 | Wheat | nucleus | 46.36 | 38.05 |
| TraesCS2D01G238900.1 | Wheat | nucleus | 42.53 | 37.88 |
| TraesCS4B01G026400.1 | Wheat | nucleus | 45.98 | 37.62 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 42.15 | 37.54 |
| TraesCS2B01G259400.1 | Wheat | nucleus | 42.15 | 37.54 |
| Zm00001d019041_P001 | Maize | extracellular, plasma membrane | 41.76 | 37.2 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 44.06 | 33.33 |
| CDX83617 | Canola | nucleus | 27.2 | 30.6 |
| CDY59763 | Canola | nucleus | 19.16 | 29.94 |
| CDY70933 | Canola | nucleus | 19.16 | 29.76 |
| CDY13632 | Canola | nucleus | 27.2 | 29.71 |
| CDY52166 | Canola | nucleus | 27.59 | 29.63 |
| CDY42616 | Canola | cytosol | 17.62 | 29.3 |
| CDX90323 | Canola | plastid | 18.39 | 29.09 |
| CDY15876 | Canola | nucleus | 18.77 | 28.99 |
| Zm00001d007799_P001 | Maize | mitochondrion, plastid | 42.53 | 28.91 |
| CDY48990 | Canola | nucleus | 26.82 | 28.81 |
| CDY72366 | Canola | nucleus | 18.77 | 28.66 |
| CDY12133 | Canola | cytosol | 17.24 | 28.48 |
| CDY41969 | Canola | cytosol | 13.03 | 26.56 |
| CDX71276 | Canola | nucleus | 16.86 | 25.58 |
| CDY08312 | Canola | mitochondrion | 14.18 | 24.18 |
| CDY06468 | Canola | mitochondrion | 13.41 | 23.65 |
| CDY46213 | Canola | nucleus | 10.34 | 22.13 |
| CDY47314 | Canola | mitochondrion | 12.64 | 22.0 |
| CDY53035 | Canola | mitochondrion | 12.64 | 21.85 |
| CDY19230 | Canola | mitochondrion | 11.11 | 20.86 |
| CDY47311 | Canola | mitochondrion | 11.49 | 20.83 |
| CDY26743 | Canola | mitochondrion | 11.49 | 20.27 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 5.75 | 15.62 |
| CDY16825 | Canola | plastid | 15.71 | 15.59 |
| CDY31588 | Canola | nucleus | 4.6 | 15.38 |
| CDX82164 | Canola | mitochondrion | 8.43 | 15.17 |
| CDY49123 | Canola | mitochondrion | 14.94 | 14.66 |
| CDY51614 | Canola | mitochondrion | 8.05 | 14.48 |
| CDX73070 | Canola | mitochondrion | 14.94 | 14.44 |
| CDY09244 | Canola | mitochondrion | 5.75 | 14.42 |
| CDX96526 | Canola | mitochondrion | 14.94 | 14.03 |
| CDY14089 | Canola | mitochondrion | 7.66 | 13.7 |
| CDY04982 | Canola | mitochondrion | 7.66 | 13.7 |
| CDY42426 | Canola | mitochondrion | 12.64 | 13.64 |
| CDY02175 | Canola | mitochondrion | 17.62 | 13.57 |
| CDX87197 | Canola | plastid | 16.09 | 12.77 |
| CDX74955 | Canola | plastid | 6.9 | 12.41 |
| CDX91368 | Canola | plastid | 6.9 | 12.41 |
| CDY28003 | Canola | plastid | 6.51 | 11.81 |
| CDY43035 | Canola | plastid | 6.51 | 11.11 |
| CDY43820 | Canola | plastid | 6.51 | 10.83 |
| CDY35978 | Canola | mitochondrion, plastid | 5.75 | 10.49 |
| CDY64931 | Canola | plastid | 6.13 | 10.46 |
| CDY42466 | Canola | plastid | 6.13 | 10.46 |
| CDY31170 | Canola | mitochondrion, nucleus | 4.98 | 9.85 |
| CDX83260 | Canola | mitochondrion | 4.6 | 8.96 |
| CDY65478 | Canola | endoplasmic reticulum | 6.51 | 8.17 |
| CDX71070 | Canola | mitochondrion | 3.45 | 5.92 |
| CDY19589 | Canola | plastid | 5.36 | 3.75 |
| CDY06395 | Canola | nucleus | 5.36 | 3.52 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:A0A078CVM1 | EnsemblPlants:CDX80910 | ProteinID:CDX80910 |
| ProteinID:CDX80910.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00134318001 |
| InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR44993 | PANTHER:PTHR44993:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI0004EDC8D3 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g01640D
Coordinates
chrLK031823:+:765400..766635
Molecular Weight (calculated)
28446.4 Da
IEP (calculated)
9.492
GRAVY (calculated)
-1.127
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERDTGRSR GFGFITFADR RAMDESIREM HGRDFGDRVI SVNRAEPKMG GRDDGENGGY SLAGKGSFGG GGRVGEDECF KCGRVGHWAR DCPSATGGRG
101: GPVGGFSSRA AYGGSDGRVD RYADRERYVD RERYIDDRYD GGAPRFGARD RFDSREAYIP RDRYASDRYA APVDRFAGGD RYSRGSDRYP PASYEKPRSF
201: ERDLVPSAGS DRYGGGRAGG PIRGGDEGRG FRSRASGPYE RPSRSSGGGG GYPSSGTLDR Y
101: GPVGGFSSRA AYGGSDGRVD RYADRERYVD RERYIDDRYD GGAPRFGARD RFDSREAYIP RDRYASDRYA APVDRFAGGD RYSRGSDRYP PASYEKPRSF
201: ERDLVPSAGS DRYGGGRAGG PIRGGDEGRG FRSRASGPYE RPSRSSGGGG GYPSSGTLDR Y
001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY
Arabidopsis Description
RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.