Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008100.1-P | Field mustard | cytosol | 59.38 | 69.51 |
| Solyc09g011210.2.1 | Tomato | plastid | 62.5 | 45.45 |
| KXG26990 | Sorghum | plastid | 60.42 | 39.46 |
| AT1G73530.1 | Thale cress | plastid | 71.88 | 38.12 |
| Zm00001d026016_P002 | Maize | plastid | 59.38 | 38.0 |
| PGSC0003DMT400022733 | Potato | plastid | 63.54 | 37.42 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 65.62 | 37.06 |
| KRH09475 | Soybean | plastid | 63.54 | 33.89 |
| VIT_17s0053g00760.t01 | Wine grape | plastid | 54.17 | 32.7 |
| Bra003841.1-P | Field mustard | cytosol, nucleus, plastid | 83.33 | 31.13 |
| CDY09244 | Canola | mitochondrion | 33.33 | 30.77 |
| KRH38934 | Soybean | plastid | 45.83 | 28.57 |
| CDY64931 | Canola | plastid | 42.71 | 26.8 |
| CDY43035 | Canola | plastid | 42.71 | 26.8 |
| CDY42466 | Canola | plastid | 42.71 | 26.8 |
| CDY43820 | Canola | plastid | 42.71 | 26.11 |
| CDX91368 | Canola | plastid | 37.5 | 24.83 |
| CDX74955 | Canola | plastid | 37.5 | 24.83 |
| CDY46213 | Canola | nucleus | 30.21 | 23.77 |
| CDY31170 | Canola | mitochondrion, nucleus | 32.29 | 23.48 |
| CDY04982 | Canola | mitochondrion | 34.38 | 22.6 |
| CDY14089 | Canola | mitochondrion | 34.38 | 22.6 |
| CDX83260 | Canola | mitochondrion | 31.25 | 22.39 |
| CDY41969 | Canola | cytosol | 29.17 | 21.88 |
| CDY31588 | Canola | nucleus | 17.71 | 21.79 |
| CDY35978 | Canola | mitochondrion, plastid | 30.21 | 20.28 |
| CDY19230 | Canola | mitochondrion | 29.17 | 20.14 |
| CDY47311 | Canola | mitochondrion | 30.21 | 20.14 |
| CDY06468 | Canola | mitochondrion | 30.21 | 19.59 |
| CDY28003 | Canola | plastid | 29.17 | 19.44 |
| CDY47314 | Canola | mitochondrion | 30.21 | 19.33 |
| CDY53035 | Canola | mitochondrion | 30.21 | 19.21 |
| CDY08312 | Canola | mitochondrion | 30.21 | 18.95 |
| CDY15876 | Canola | nucleus | 33.33 | 18.93 |
| CDY72366 | Canola | nucleus | 33.33 | 18.71 |
| CDY42616 | Canola | cytosol | 30.21 | 18.47 |
| CDY70933 | Canola | nucleus | 32.29 | 18.45 |
| CDY26743 | Canola | mitochondrion | 28.12 | 18.24 |
| CDY59763 | Canola | nucleus | 31.25 | 17.96 |
| Os04t0583800-01 | Rice | plastid | 21.88 | 17.8 |
| CDY12133 | Canola | cytosol | 29.17 | 17.72 |
| CDX90323 | Canola | plastid | 30.21 | 17.58 |
| CDX82164 | Canola | mitochondrion | 26.04 | 17.24 |
| CDX71276 | Canola | nucleus | 29.17 | 16.28 |
| CDY51614 | Canola | mitochondrion | 22.92 | 15.17 |
| CDX71070 | Canola | mitochondrion | 21.88 | 13.82 |
| CDX83617 | Canola | nucleus | 31.25 | 12.93 |
| CDY48990 | Canola | nucleus | 32.29 | 12.76 |
| CDY52166 | Canola | nucleus | 32.29 | 12.76 |
| CDY13632 | Canola | nucleus | 31.25 | 12.55 |
| CDY65478 | Canola | endoplasmic reticulum | 25.0 | 11.54 |
| CDY42426 | Canola | mitochondrion | 28.12 | 11.16 |
| CDY49123 | Canola | mitochondrion | 29.17 | 10.53 |
| CDY19589 | Canola | plastid | 40.62 | 10.46 |
| CDX73070 | Canola | mitochondrion | 28.12 | 10.0 |
| CDX96526 | Canola | mitochondrion | 28.12 | 9.71 |
| CDY06395 | Canola | nucleus | 39.58 | 9.55 |
| CDY16825 | Canola | plastid | 25.0 | 9.13 |
| CDY34132 | Canola | nucleus | 20.83 | 7.84 |
| CDY11283 | Canola | nucleus | 25.0 | 7.84 |
| CDX87197 | Canola | plastid | 25.0 | 7.29 |
| CDY02175 | Canola | mitochondrion | 25.0 | 7.08 |
| CDX80910 | Canola | nucleus | 15.62 | 5.75 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078CY36 | EnsemblPlants:CDX82066 | ProteinID:CDX82066 | ProteinID:CDX82066.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0016554 | GO:GO:1900871 | EnsemblPlantsGene:GSBRNA2T00137085001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45502 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEBFE6 | : | : | : |
Description
BnaC02g22240D
Coordinates
chrLK031827:+:379682..380209
Molecular Weight (calculated)
10991.2 Da
IEP (calculated)
7.364
GRAVY (calculated)
-0.523
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MVLLCTGLSF RTTEDNLRKA FEQFGKLTLV NLVMDKVANR PRGFAFLRYE TEEESMKATE GMHGKFLDGR VIFVEEAKPM SDIQRAKPRS DQQSSD
001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
Arabidopsis Description
ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.