CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008142.1-P	Field mustard	mitochondrion	97.74	98.48
CDY42426	Canola	mitochondrion	83.46	91.74
CDX73070	Canola	mitochondrion	90.6	89.26
CDX96526	Canola	mitochondrion	90.6	86.69
AT1G74230.1	Thale cress	mitochondrion, plastid	86.09	79.24
CDX82164	Canola	mitochondrion	42.11	77.24
CDY51614	Canola	mitochondrion	39.1	71.72
CDY06468	Canola	mitochondrion	30.45	54.73
CDY08312	Canola	mitochondrion	30.45	52.94
CDY53035	Canola	mitochondrion	29.7	52.32
CDY47311	Canola	mitochondrion	28.2	52.08
CDY47314	Canola	mitochondrion	29.32	52.0
CDY15876	Canola	nucleus	30.45	47.93
Solyc10g081180.1.1	Tomato	nucleus	39.1	47.27
CDY42616	Canola	cytosol	27.82	47.13
CDY72366	Canola	nucleus	30.08	46.78
CDY16825	Canola	plastid	46.24	46.77
CDY59763	Canola	nucleus	29.32	46.71
CDY70933	Canola	nucleus	28.95	45.83
CDX90323	Canola	plastid	28.2	45.45
CDY41969	Canola	cytosol	21.43	44.53
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	43.23	43.73
CDY46213	Canola	nucleus	19.92	43.44
CDY26743	Canola	mitochondrion	23.68	42.57
CDX71276	Canola	nucleus	27.44	42.44
CDY12133	Canola	cytosol	24.81	41.77
CDY19230	Canola	mitochondrion	21.8	41.73
CDY65478	Canola	endoplasmic reticulum	32.33	41.35
CDY02175	Canola	mitochondrion	50.38	39.53
CDX87197	Canola	plastid	46.99	37.99
CDY04982	Canola	mitochondrion	19.55	35.62
CDY14089	Canola	mitochondrion	19.17	34.93
CDY28003	Canola	plastid	17.67	32.64
CDY09244	Canola	mitochondrion	12.41	31.73
CDY31588	Canola	nucleus	9.02	30.77
CDX74955	Canola	plastid	16.17	29.66
CDX91368	Canola	plastid	16.17	29.66
CDY35978	Canola	mitochondrion, plastid	15.79	29.37
CDX82066	Canola	cytosol, nucleus, plastid	10.53	29.17
CDX83260	Canola	mitochondrion	14.29	28.36
CDY42466	Canola	plastid	16.17	28.1
CDY31170	Canola	mitochondrion, nucleus	13.91	28.03
CDY43035	Canola	plastid	15.41	26.8
CDY64931	Canola	plastid	15.41	26.8
CDY43820	Canola	plastid	15.41	26.11
CDX71070	Canola	mitochondrion	13.16	23.03
CDX83617	Canola	nucleus	19.92	22.84
CDY48990	Canola	nucleus	20.68	22.63
CDY13632	Canola	nucleus	20.3	22.59
CDY52166	Canola	nucleus	20.3	22.22
CDY11283	Canola	nucleus	20.68	17.97
CDY34132	Canola	nucleus	16.17	16.86
CDX80910	Canola	nucleus	14.66	14.94
CDY19589	Canola	plastid	14.66	10.46
CDY06395	Canola	nucleus	13.91	9.3

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:A0A078IJ69	UniProt:A0A078IJ69	EnsemblPlants:CDY49123	ProteinID:CDY49123
ProteinID:CDY49123.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00092357001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PRINTS:PR01228	PFscan:PS50102
PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF0BB0
SEG:seg	:	:	:	:	:

Description

BnaA02g16830DBnaA02g16830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJ69]

Coordinates

chrLK032811:-:50251..52343

Molecular Weight (calculated)

26775.9 Da

IEP (calculated)

4.292

GRAVY (calculated)

-0.575

Length

266 amino acids

Sequence
(BLAST)

001: MAFLSKVGRI FRQTSTHVTA SNSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMELDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA PAGGYGGGSG GGGGYGTPSG GYGGGSSYGG NAGGGGYGGN SAYGGNAGGD GYGSNFGVAG GVGGSDNFAQ
201: DSSSSAGFDD KFSSDVPLGN DTDHQLESGE EFGGSDNQFG DSENGQTEVG PDGFDQTDDG DVAKRA

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.