Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70933 | Canola | nucleus | 99.4 | 98.81 |
| AT2G21660.1 | Thale cress | nucleus | 93.41 | 88.64 |
| CDY15876 | Canola | nucleus | 89.22 | 88.17 |
| CDY72366 | Canola | nucleus | 87.43 | 85.38 |
| Solyc10g051390.1.1 | Tomato | nucleus | 56.89 | 80.51 |
| CDY42616 | Canola | cytosol | 72.46 | 77.07 |
| CDX90323 | Canola | plastid | 75.45 | 76.36 |
| CDY41969 | Canola | cytosol | 58.08 | 75.78 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 71.26 | 73.46 |
| KRH29451 | Soybean | nucleus | 74.85 | 73.1 |
| Solyc10g051380.1.1 | Tomato | nucleus | 56.89 | 73.08 |
| CDY12133 | Canola | cytosol | 68.86 | 72.78 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 57.48 | 72.18 |
| PGSC0003DMT400001879 | Potato | cytosol | 76.05 | 72.16 |
| Solyc01g109660.2.1 | Tomato | extracellular | 75.45 | 72.0 |
| KRH29453 | Soybean | nucleus | 59.88 | 71.43 |
| KRH29452 | Soybean | nucleus | 66.47 | 71.15 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 68.86 | 70.55 |
| TraesCS4A01G293000.1 | Wheat | plastid | 68.26 | 70.37 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 65.27 | 70.32 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 66.47 | 70.25 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 70.66 | 69.41 |
| Zm00001d041246_P001 | Maize | nucleus | 59.88 | 68.97 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 68.26 | 68.67 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 65.27 | 68.55 |
| KRH51528 | Soybean | nucleus | 74.25 | 68.13 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 65.87 | 67.9 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 65.87 | 67.9 |
| Os12t0632000-01 | Rice | nucleus | 65.87 | 67.9 |
| PGSC0003DMT400084266 | Potato | extracellular | 65.27 | 67.7 |
| PGSC0003DMT400084258 | Potato | nucleus | 67.07 | 67.47 |
| PGSC0003DMT400083014 | Potato | nucleus | 67.07 | 67.47 |
| PGSC0003DMT400084290 | Potato | nucleus | 67.07 | 67.47 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 65.27 | 67.28 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 62.28 | 67.1 |
| KRH29454 | Soybean | nucleus | 68.26 | 67.06 |
| EES16438 | Sorghum | nucleus | 65.87 | 66.67 |
| KRH60842 | Soybean | mitochondrion | 73.65 | 66.49 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 66.47 | 66.47 |
| Zm00001d031168_P001 | Maize | plastid | 61.68 | 66.45 |
| KXG37870 | Sorghum | nucleus | 65.87 | 64.71 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 65.87 | 64.71 |
| CDX71276 | Canola | nucleus | 66.47 | 64.53 |
| CDY46213 | Canola | nucleus | 46.71 | 63.93 |
| TraesCS5D01G020900.1 | Wheat | plastid | 66.47 | 63.79 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 57.48 | 55.49 |
| Os03t0670700-01 | Rice | nucleus | 64.07 | 54.59 |
| CDY53035 | Canola | mitochondrion | 42.52 | 47.02 |
| CDY47314 | Canola | mitochondrion | 41.92 | 46.67 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 26.95 | 45.45 |
| CDY06468 | Canola | mitochondrion | 40.12 | 45.27 |
| CDY08312 | Canola | mitochondrion | 40.72 | 44.44 |
| CDY47311 | Canola | mitochondrion | 38.32 | 44.44 |
| CDY26743 | Canola | mitochondrion | 33.53 | 37.84 |
| CDY19230 | Canola | mitochondrion | 29.94 | 35.97 |
| CDX82164 | Canola | mitochondrion | 30.54 | 35.17 |
| CDY52166 | Canola | nucleus | 48.5 | 33.33 |
| CDX83617 | Canola | nucleus | 46.11 | 33.19 |
| CDY51614 | Canola | mitochondrion | 28.74 | 33.1 |
| CDY48990 | Canola | nucleus | 47.9 | 32.92 |
| CDY13632 | Canola | nucleus | 46.71 | 32.64 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 17.96 | 31.25 |
| CDY31588 | Canola | nucleus | 14.37 | 30.77 |
| CDY49123 | Canola | mitochondrion | 46.71 | 29.32 |
| CDX73070 | Canola | mitochondrion | 46.71 | 28.89 |
| CDX96526 | Canola | mitochondrion | 47.31 | 28.42 |
| CDY09244 | Canola | mitochondrion | 17.37 | 27.88 |
| CDX74955 | Canola | plastid | 23.95 | 27.59 |
| CDX91368 | Canola | plastid | 23.95 | 27.59 |
| CDY16825 | Canola | plastid | 43.11 | 27.38 |
| CDY42426 | Canola | mitochondrion | 38.92 | 26.86 |
| CDY04982 | Canola | mitochondrion | 21.56 | 24.66 |
| CDY14089 | Canola | mitochondrion | 21.56 | 24.66 |
| CDY28003 | Canola | plastid | 20.96 | 24.31 |
| CDY64931 | Canola | plastid | 20.96 | 22.88 |
| CDY42466 | Canola | plastid | 20.96 | 22.88 |
| CDY43035 | Canola | plastid | 20.96 | 22.88 |
| CDY02175 | Canola | mitochondrion | 45.51 | 22.42 |
| CDY35978 | Canola | mitochondrion, plastid | 19.16 | 22.38 |
| CDY43820 | Canola | plastid | 20.96 | 22.29 |
| CDY11283 | Canola | nucleus | 40.12 | 21.9 |
| CDX87197 | Canola | plastid | 43.11 | 21.88 |
| CDY65478 | Canola | endoplasmic reticulum | 26.35 | 21.15 |
| CDY31170 | Canola | mitochondrion, nucleus | 16.17 | 20.45 |
| CDX83260 | Canola | mitochondrion | 16.17 | 20.15 |
| CDX80910 | Canola | nucleus | 29.94 | 19.16 |
| CDX71070 | Canola | mitochondrion | 17.37 | 19.08 |
| CDY34132 | Canola | nucleus | 28.14 | 18.43 |
| CDY19589 | Canola | plastid | 17.96 | 8.04 |
| CDY06395 | Canola | nucleus | 17.37 | 7.29 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | GO:A0A078J5Z4 | UniProt:A0A078J5Z4 | EnsemblPlants:CDY59763 | ProteinID:CDY59763 |
| ProteinID:CDY59763.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00027665001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44202 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EB578A | SEG:seg |
Description
BnaC08g49360DBnaC08g49360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5Z4]
Coordinates
chrLK033803:-:40982..42053
Molecular Weight (calculated)
16129.2 Da
IEP (calculated)
5.259
GRAVY (calculated)
-0.789
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPDVEYRC FVGGLAWATD DRALETAFSQ YGDVLDSKII NDRETGRSRG FGFVTFKDEK SMKDAIEGMN GQDLDGRSIT VNEAQSRGGG GGGGRGGGGG
101: GYRSGGGGGY GGGGGGYGGG GGRREGGYSG GGGGGYSSRG GGGGGGYGGR RDGGEGGGYG GSGGGGW
101: GYRSGGGGGY GGGGGGYGGG GGRREGGYSG GGGGGYSSRG GGGGGGYGGR RDGGEGGGYG GSGGGGW
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.