CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38700	Canola	plastid	100.0	100.0
CDX98578	Canola	plastid	98.52	99.25
CDY45484	Canola	mitochondrion	64.44	63.5
CDX92356	Canola	cytosol	97.04	30.54
CDY21199	Canola	cytosol	97.04	30.54
ATCG00490.1	Thale cress	cytosol	91.11	25.68
Solyc01g007330.2.1	Tomato	plastid	89.63	25.37
PGSC0003DMT400083063	Potato	cytosol, extracellular	33.33	12.43
CDX98577	Canola	cytosol	0.0	0.0
CDX99944	Canola	cytosol	0.0	0.0
CDY10606	Canola	cytosol	0.0	0.0
CDY38699	Canola	cytosol	0.0	0.0
CDY45485	Canola	plastid	0.0	0.0
VIT_16s0013g00330.t01	Wine grape	cytosol, extracellular	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.30.70.150	MapMan:35.1	GO:A0A078ECX4	UniProt:A0A078ECX4
EnsemblPlants:CDX99945	ProteinID:CDX99945	ProteinID:CDX99945.1	ProteinID:CDY38700.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0015977	GO:GO:0016984	EnsemblPlantsGene:GSBRNA2T00108799001	InterPro:IPR036422
PFAM:PF02788	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO_lsu_N_sf
InterPro:RuBisCO_lsu_fd_N	SUPFAM:SSF54966	UniParc:UPI0004EEE291	SEG:seg	:	:

Description

BnaC09g27600DBnaC01g27970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ECX4]

Coordinates

chrLK031915:-:971466..972058

Molecular Weight (calculated)

14722.4 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.301

Length

135 amino acids

Sequence
(BLAST)

001: MTCREGLMSP QTETKASVGF KAGVKEYKLN YYTPEYETKD TDILAAFRVT PQPGVPPEEA GAAVAAESST AYPLDLFEEG SVTNMFTSIV GNVFGFKALA
101: ALRLEDLRIP PAYTKTFQGP PHGIQVERDK LNNSL

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.