Factsheet for ATCG00490.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98577	Canola	cytosol	54.91	98.13
CDX99944	Canola	cytosol	54.91	98.13
CDY38699	Canola	cytosol	54.91	98.13
Solyc01g007330.2.1	Tomato	plastid	92.07	92.45
CDX98578	Canola	plastid	25.68	91.79
PGSC0003DMT400083063	Potato	cytosol, extracellular	69.1	91.44
CDX99945	Canola	plastid	25.68	91.11
CDY38700	Canola	plastid	25.68	91.11
VIT_16s0013g00330.t01	Wine grape	cytosol, extracellular	18.58	76.72
ATMG00280.1	Thale cress	mitochondrion	16.91	73.64
AT2G07732.1	Thale cress	mitochondrion	16.7	68.97

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.1	Gene3D:3.20.20.110	Gene3D:3.30.70.150	PDB:5IU0
EntrezGene:844754	UniProt:A0A1B1W4U8	ProteinID:AAB68400.1	ProteinID:ANW47798.1	ArrayExpress:ATCG00490	EnsemblPlantsGene:ATCG00490
RefSeq:ATCG00490	TAIR:ATCG00490	RefSeq:ATCG00490-TAIR-G	EnsemblPlants:ATCG00490.1	TAIR:ATCG00490.1	ProteinID:BAA19595.1
ProteinID:BAA20946.1	ProteinID:BAA84393.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009719	GO:GO:0009737	GO:GO:0009853	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015977	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984
GO:GO:0019253	GO:GO:0022626	GO:GO:0030312	GO:GO:0046686	GO:GO:0046872	GO:GO:0048046
GO:GO:0055114	InterPro:IPR036376	InterPro:IPR036422	HAMAP:MF_01338	RefSeq:NP_051067.1	UniProt:O03042
PFAM:PF00016	PFAM:PF02788	ScanProsite:PS00157	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	Symbol:RBCL
InterPro:RuBisCO	InterPro:RuBisCO_lsuI	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N
InterPro:RuBisCo_large_chain_AS	SUPFAM:SSF51649	SUPFAM:SSF54966	UniParc:UPI000013320B	SEG:seg	:

Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]

Coordinates

chrPt:+:54958..56397

Molecular Weight (calculated)

52957.9 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.272

Length

479 amino acids

Sequence
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.