Factsheet for VIT_16s0013g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00790.t01	Wine grape	cytosol	30.17	42.68
CDX98577	Canola	cytosol	76.72	33.21
CDX99944	Canola	cytosol	76.72	33.21
CDY38699	Canola	cytosol	76.72	33.21
PGSC0003DMT400083063	Potato	cytosol, extracellular	77.59	24.86
Solyc01g007330.2.1	Tomato	plastid	78.45	19.08
ATCG00490.1	Thale cress	cytosol	76.72	18.58
Bra028087.1-P	Field mustard	cytosol	76.72	18.58
CDX98578	Canola	plastid	0.0	0.0
CDX99945	Canola	plastid	0.0	0.0
CDY38700	Canola	plastid	0.0	0.0
VIT_07s0031g03000.t01	Wine grape	cytosol	0.0	0.0
VIT_12s0055g00520.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.20.20.110	MapMan:35.1	ProteinID:CBI38562	ProteinID:CBI38562.3
UniProt:D7U748	EMBL:FN596738	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0019253	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036376	PFAM:PF00016
PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	SUPFAM:SSF51649	UniParc:UPI0001BE4CD3
ArrayExpress:VIT_16s0013g00330	EnsemblPlantsGene:VIT_16s0013g00330	EnsemblPlants:VIT_16s0013g00330.t01	:	:	:

Description

No Description!

Coordinates

chr16:-:5357332..5358151

Molecular Weight (calculated)

13356.0 Da

IEP (calculated)

4.534

GRAVY (calculated)

-0.056

Length

116 amino acids

Sequence
(BLAST)

001: MKNVRILVGK LEEEREITLG FVDLLRDDFV EKDRSHGIYF TQDWVFLPSV LLVASGSIHV WHMPTLTEIF GDDFGRDLAR EGNEIIRAAS KWSPELAAAC
101: EVWKEIKFEF PAMDTL

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.