Factsheet for PGSC0003DMT400083063

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98577	Canola	cytosol	65.75	88.81
CDX99944	Canola	cytosol	65.75	88.81
CDY38699	Canola	cytosol	65.75	88.81
VIT_16s0013g00330.t01	Wine grape	cytosol, extracellular	24.86	77.59
Solyc01g007330.2.1	Tomato	plastid	98.62	74.84
ATCG00490.1	Thale cress	cytosol	91.44	69.1
Bra028087.1-P	Field mustard	cytosol	91.44	69.1
CDX98578	Canola	plastid	12.43	33.58
CDX99945	Canola	plastid	12.43	33.33
CDY38700	Canola	plastid	12.43	33.33

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.1	Gene3D:3.20.20.110	Gene3D:3.30.70.150	EntrezGene:4099985
wikigene:4099985	ProteinID:AAB01597	ProteinID:AAB01597.1	ProteinID:ABB90049	ProteinID:ABB90049.1	ProteinID:ABD47065
ProteinID:ABD47065.1	ProteinID:AEB72147	ProteinID:AEB72147.1	ProteinID:AEB72233	ProteinID:AEB72233.1	ProteinID:AFW90629
ProteinID:AFW90629.1	EMBL:DQ231562	EMBL:DQ386163	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004497	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009719	GO:GO:0009737	GO:GO:0009853	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015977	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0019253	GO:GO:0022626	GO:GO:0030312	GO:GO:0046686	GO:GO:0046872
GO:GO:0048046	GO:GO:0055114	InterPro:IPR036376	InterPro:IPR036422	EMBL:JF772170	EMBL:JF772171
EMBL:JX576273	UniProt:M1D6E8	EMBL:M76402	PFAM:PF00016	PFAM:PF02788	EnsemblPlantsGene:PGSC0003DMG400033037
PGSC:PGSC0003DMG400033037	EnsemblPlants:PGSC0003DMT400083063	ScanProsite:PS00157	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	InterPro:RuBisCO
InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	InterPro:RuBisCo_large_chain_AS	SUPFAM:SSF51649
SUPFAM:SSF54966	UniParc:UPI000294F946	EntrezGene:rbcL	wikigene:rbcL	:	:

Description

Ribulose bisphosphate carboxylase large chain [Source:PGSC_GENE;Acc:PGSC0003DMG400033037]

Coordinates

chr6:-:51874728..51876278

Molecular Weight (calculated)

40270.5 Da

IEP (calculated)

7.604

GRAVY (calculated)

-0.171

Length

362 amino acids

Sequence
(BLAST)

001: MFTSIVGNVF GFKALRALRL EDLRIPTAYV KTFQGPPHGI QVERDKLNKY GRPLLGCTIK PKLGLSAKNY GRAVYECLRG GLDFTKDDEN VNSQPFMRWR
101: DRFLFCAEAL FKAQTETGEI KGHYLNATAG TCEEMMKRAV FARELGVPIV MHDYLTGGFT ANTTLAHYCR DNGLLLHIHR AMHAVIDRQK NHGIHFRVLA
201: KALRMSGGDH IHSGTVVGKL EGERDITLGF VDLLRDDFIE QDRSRGIYFT QDWVSLPGVL PVASGGIHVW HMPALTEIFG DDSVLQFGGG TLGHPWGNAP
301: GAVANRVALE ACVKARNEGR DLAQEGNEII REACKWSPEL AAACEVWKEI VFNFAAMDVL DK

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.