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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g007330.2.1 Tomato plastid 91.44 91.82
PGSC0003DMT400083063 Potato cytosol, extracellular 69.1 91.44
Bra041116.1-P Field mustard cytosol, mitochondrion 82.46 82.12
VIT_16s0013g00330.t01 Wine grape cytosol, extracellular 18.58 76.72
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.1Gene3D:3.20.20.110Gene3D:3.30.70.150ProteinID:AAM46794
ProteinID:AAM46794.1ProteinID:ACT09332ProteinID:ACT09332.1EMBL:AF479573ProteinID:ASY93544.1EnsemblPlantsGene:Bra028087
EnsemblPlants:Bra028087.1EnsemblPlants:Bra028087.1-PGO:GO:0000287GO:GO:0003674GO:GO:0003824GO:GO:0004497
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009853
GO:GO:0009987GO:GO:0015977GO:GO:0015979GO:GO:0016491GO:GO:0016829GO:GO:0016984
GO:GO:0019253GO:GO:0046872GO:GO:0055114EMBL:GQ184364InterPro:IPR036376InterPro:IPR036422
UniProt:M4EH22HAMAP:MF_01338PFAM:PF00016PFAM:PF02788ScanProsite:PS00157PANTHER:PTHR42704
PANTHER:PTHR42704:SF2InterPro:RuBisCOInterPro:RuBisCO_lsuIInterPro:RuBisCO_lsu_CInterPro:RuBisCO_lsu_C_sfInterPro:RuBisCO_lsu_N_sf
InterPro:RuBisCO_lsu_fd_NInterPro:RuBisCo_large_chain_ASSUPFAM:SSF51649SUPFAM:SSF54966UniParc:UPI00000008A4SEG:seg
Description
ATCG00490 (E=4e-277) RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Coordinates
chrA09:-:18455907..18457346
Molecular Weight (calculated)
52959.0 Da
IEP (calculated)
6.239
GRAVY (calculated)
-0.278
Length
479 amino acids
Sequence
(BLAST)
001: MSPQTETKAS VGFKAGVKEY KLNYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM MKRAIFAREL GVPIVMHDYL TGGFTANTSL AHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHVHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQD
Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)
001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE
Arabidopsis Description
RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.