Factsheet for Solyc01g007330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083063	Potato	cytosol, extracellular	74.84	98.62
ATCG00490.1	Thale cress	cytosol	92.45	92.07
Bra028087.1-P	Field mustard	cytosol	91.82	91.44
CDX98578	Canola	plastid	25.37	90.3
CDX99945	Canola	plastid	25.37	89.63
CDY38700	Canola	plastid	25.37	89.63
CDX98577	Canola	cytosol	49.9	88.81
CDX99944	Canola	cytosol	49.9	88.81
CDY38699	Canola	cytosol	49.9	88.81
Solyc04g039840.1.1	Tomato	cytosol	11.32	84.38
Solyc12g062540.1.1	Tomato	cytosol	25.58	84.14
Solyc07g021190.1.1	Tomato	cytosol	19.5	81.58
VIT_16s0013g00330.t01	Wine grape	cytosol, extracellular	19.08	78.45
Solyc12g062550.1.1	Tomato	plastid	12.16	56.86
Solyc02g077860.1.1	Tomato	cytosol, extracellular	14.26	52.71
Solyc10g047430.1.1	Tomato	cytosol	6.92	45.21
Solyc12g062420.1.1	Tomato	cytosol	10.69	44.74
Solyc12g062560.1.1	Tomato	plastid	8.39	35.71
Solyc07g021200.1.1	Tomato	plastid	8.18	21.55

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.1	Gene3D:3.20.20.110	Gene3D:3.30.70.150	UniProt:A0A0C5CHE6
ProteinID:ABC56308.1	ProteinID:AJO25120.1	ProteinID:AJY79032.1	ProteinID:ANW81471.1	ProteinID:ANW81479.1	ProteinID:ANW81480.1
ProteinID:ANW81481.1	ProteinID:ASR92427.1	ProteinID:ASR92514.1	ProteinID:CAJ32401.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003735	GO:GO:0003824	GO:GO:0004497	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0005975	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009719
GO:GO:0009737	GO:GO:0009853	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015977
GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253
GO:GO:0019538	GO:GO:0022626	GO:GO:0030312	GO:GO:0046686	GO:GO:0046872	GO:GO:0048046
GO:GO:0055114	InterPro:IPR036376	InterPro:IPR036422	EMBL:L14403	HAMAP:MF_01338	UniProt:P27065
PFAM:PF00016	PFAM:PF02788	ScanProsite:PS00157	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	InterPro:RuBisCO
InterPro:RuBisCO_lsuI	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	InterPro:RuBisCo_large_chain_AS
SUPFAM:SSF51649	SUPFAM:SSF54966	EnsemblPlantsGene:Solyc01g007330.2	EnsemblPlants:Solyc01g007330.2.1	UniParc:UPI000067D9D8	SEG:seg

Description

rbcLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/TrEMBL;Acc:A0A0C5CHE6]

Coordinates

chr1:+:1851938..1853783

Molecular Weight (calculated)

52957.3 Da

IEP (calculated)

7.016

GRAVY (calculated)

-0.240

Length

477 amino acids

Sequence
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYQ TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYRIERV VGEKDQYIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL RALRLEDLRI PPAYVKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEALFKAQT ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTTL AHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGIH FRVLAKALRM SGGDHIHSGT VVGKLEGERD ITLGFVDLLR DDFVEQDRSR GIYFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVKA RNEGRDLARE GNEIIREACK WSPELAAACE VWKEIVFNFA AVDVLDK

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.