Factsheet for Solyc12g062540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g021190.1.1	Tomato	cytosol	57.24	72.81
Solyc04g039840.1.1	Tomato	cytosol	26.9	60.94
Zm00001d037514_P001	Maize	plastid	60.69	50.87
CDY45484	Canola	mitochondrion	44.83	47.45
Solyc01g007330.2.1	Tomato	plastid	84.14	25.58
Solyc02g077860.1.1	Tomato	cytosol, extracellular	2.07	2.33
CDY45485	Canola	plastid	0.0	0.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	0.0	0.0
GSMUA_Achr5P18590_001	Banana	plasma membrane	0.0	0.0
Solyc07g021200.1.1	Tomato	plastid	0.0	0.0
Solyc10g047430.1.1	Tomato	cytosol	0.0	0.0
Solyc12g062420.1.1	Tomato	cytosol	0.0	0.0
Solyc12g062550.1.1	Tomato	plastid	0.0	0.0
Solyc12g062560.1.1	Tomato	plastid	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.30.70.150	MapMan:35.1	GO:GO:0000312	GO:GO:0003674
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0015977	GO:GO:0016984	GO:GO:0019538
InterPro:IPR036422	UniProt:K4DG80	PFAM:PF02788	PANTHER:PTHR23321	PANTHER:PTHR23321:SF35	InterPro:Ribosomal_S15_bac-type
InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	SUPFAM:SSF54966	EnsemblPlantsGene:Solyc12g062540.1	EnsemblPlants:Solyc12g062540.1.1	UniParc:UPI000276A384

Description

No Description!

Coordinates

chr12:+:33813350..33813835

Molecular Weight (calculated)

16549.9 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.387

Length

145 amino acids

Sequence
(BLAST)

001: MSPQTETKAS FVFKAGVKEY KLTYYNPEYQ TKDTDILAAF EVTPEPRVPP EKIGAVLAAK SSTGTWTIVW TDYVVGEKDQ YIAYVAYPLD LFEKVSIINK
101: VFGFKPLPAL RLEDLRIPPS YVKTFQGPPH EIQVERDKLK KYGRP

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.