CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062550.1.1	Tomato	plastid	37.5	26.47
CDX98577	Canola	cytosol	63.89	17.16
CDX99944	Canola	cytosol	63.89	17.16
CDY38699	Canola	cytosol	63.89	17.16
CDX92356	Canola	cytosol	63.89	10.72
CDY21199	Canola	cytosol	63.89	10.72
Solyc12g062560.1.1	Tomato	plastid	13.89	8.93
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	2.78	7.41
CDY10606	Canola	cytosol	5.56	6.25
GSMUA_Achr5P18590_001	Banana	plasma membrane	4.17	5.26
CDX98578	Canola	plastid	0.0	0.0
CDX99945	Canola	plastid	0.0	0.0
CDY38700	Canola	plastid	0.0	0.0
CDY45484	Canola	mitochondrion	0.0	0.0
Solyc12g062540.1.1	Tomato	cytosol	0.0	0.0
Zm00001d037514_P001	Maize	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY45485	EnsemblPlantsGene:GSBRNA2T00082127001	Gene3D:3.20.20.110	GO:A0A078I3R9	GO:GO:0000287	GO:GO:0003674
GO:GO:0005488	InterPro:IPR036376	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39
MetaCyc:PWY-5532	MetaCyc:PWY-5723	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	PFAM:PF00016	ProteinID:CDY45485
ProteinID:CDY45485.1	SUPFAM:SSF51649	UniParc:UPI0004EF4AC1	UniProt:A0A078I3R9	MapMan:35.1	:

Description

BnaCnng12440DBnaCnng12440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3R9]

Coordinates

chrLK032627:+:10163..10519

Molecular Weight (calculated)

8357.2 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.163

Length

72 amino acids

Sequence
(BLAST)

1: MHAVIDRQKN HGMHFRVLAK ALRLSGGDHV HAGTVVVHRF SCLYLFLNRD FCGVQSTAPW VQDRKECIKW MH

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.