CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98578	Canola	plastid	63.5	64.93
CDX99945	Canola	plastid	63.5	64.44
CDY38700	Canola	plastid	63.5	64.44
Solyc12g062540.1.1	Tomato	cytosol	47.45	44.83
Zm00001d037514_P001	Maize	plastid	45.26	35.84
CDX92356	Canola	cytosol	73.72	23.54
CDY21199	Canola	cytosol	73.72	23.54
CDX98577	Canola	cytosol	0.0	0.0
CDX99944	Canola	cytosol	0.0	0.0
CDY10606	Canola	cytosol	0.0	0.0
CDY38699	Canola	cytosol	0.0	0.0
CDY45485	Canola	plastid	0.0	0.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	0.0	0.0
GSMUA_Achr5P18590_001	Banana	plasma membrane	0.0	0.0
Solyc12g062550.1.1	Tomato	plastid	0.0	0.0
Solyc12g062560.1.1	Tomato	plastid	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.20.20.110	Gene3D:3.30.70.150	MapMan:35.1	GO:A0A078I7U3
UniProt:A0A078I7U3	EnsemblPlants:CDY45484	ProteinID:CDY45484	ProteinID:CDY45484.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0015977	GO:GO:0016984
EnsemblPlantsGene:GSBRNA2T00082126001	InterPro:IPR036376	InterPro:IPR036422	PFAM:PF02788	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2
MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO_lsu_C_sf	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	SUPFAM:SSF51649
SUPFAM:SSF54966	UniParc:UPI0004EE6D02	SEG:seg	:	:	:

Description

BnaCnng12430DBnaCnng12430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7U3]

Coordinates

chrLK032627:+:8696..10110

Molecular Weight (calculated)

15115.4 Da

IEP (calculated)

10.618

GRAVY (calculated)

-0.368

Length

137 amino acids

Sequence
(BLAST)

001: MRDPTPIRGG GGCVFSRSIR SRRRRTFRVT PQPGVPPEEA GAAVAAESSI AYPLDLFEEG SVTNMFTSIV GNVFGFKALA ALRLEDLRIP PAYTKTFQGP
101: PHGIQVERDK LNKYGRPLLG CTIKPKTMVE QGIHRKY

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.