Factsheet for GSMUA_Achr5P18590_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	35.09	74.07
Solyc12g062560.1.1	Tomato	plastid	15.79	8.04
GSMUA_AchrUn_...	Banana	plastid	10.53	6.19
CDY45485	Canola	plastid	5.26	4.17
Solyc12g062550.1.1	Tomato	plastid	1.75	0.98
CDY45484	Canola	mitochondrion	0.0	0.0
Solyc12g062540.1.1	Tomato	cytosol	0.0	0.0
Zm00001d037514_P001	Maize	plastid	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.20.20.110	MapMan:35.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491
GO:GO:0016829	GO:GO:0016984	GO:GO:0019253	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G18590_001
EnsemblPlants:GSMUA_Achr5P18590_001	EnsemblPlants:GSMUA_Achr5T18590_001	InterPro:IPR036376	UniProt:M0SZN8	PFAM:PF00016	PANTHER:PTHR42704
PANTHER:PTHR42704:SF2	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	SUPFAM:SSF51649	UniParc:UPI0002952F8C	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G18590_001]

Coordinates

chr5:-:20083086..20083259

Molecular Weight (calculated)

6334.6 Da

IEP (calculated)

5.411

GRAVY (calculated)

0.430

Length

57 amino acids

Sequence
(BLAST)

1: MASTNLSIFF TQDWVSMPGV LPVASGGIHV WHMPALTEIF GDDFFFFSSL YMSSKKG

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.