Factsheet for Solyc12g062560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g021200.1.1	Tomato	plastid	69.64	43.09
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	6.25	25.93
GSMUA_Achr5P18590_001	Banana	plasma membrane	8.04	15.79
CDY45485	Canola	plastid	8.93	13.89
Solyc01g007330.2.1	Tomato	plastid	35.71	8.39
Solyc02g077860.1.1	Tomato	cytosol, extracellular	4.46	3.88
Solyc12g062420.1.1	Tomato	cytosol	2.68	2.63
Solyc12g062550.1.1	Tomato	plastid	0.89	0.98
CDY45484	Canola	mitochondrion	0.0	0.0
Solyc04g039840.1.1	Tomato	cytosol	0.0	0.0
Solyc07g021190.1.1	Tomato	cytosol	0.0	0.0
Solyc10g047430.1.1	Tomato	cytosol	0.0	0.0
Solyc12g062540.1.1	Tomato	cytosol	0.0	0.0
Zm00001d037514_P001	Maize	plastid	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.20.20.110	MapMan:35.1	GO:GO:0000287	GO:GO:0000312
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0009536	GO:GO:0009570	InterPro:IPR036376	UniProt:K4DG82	PANTHER:PTHR42704
PANTHER:PTHR42704:SF2	InterPro:RuBisCO_lsu_C_sf	SUPFAM:SSF51649	EnsemblPlantsGene:Solyc12g062560.1	EnsemblPlants:Solyc12g062560.1.1	UniParc:UPI000276A386

Description

No Description!

Coordinates

chr12:+:33814487..33814996

Molecular Weight (calculated)

12928.8 Da

IEP (calculated)

8.844

GRAVY (calculated)

-0.218

Length

112 amino acids

Sequence
(BLAST)

001: MSALTEIFGN DSALMFGGGS LGYPRVMRRD LSREGNEIIR EACKWSPKLA SSCEVSYLIL HQWMFWIRKN SRIFVPIKAR ICACGNYRVI GDEKEDPKFC
101: EQCRVKFVDS RI

Best Arabidopsis Sequence Match ( ATCG00180.1 )
(BLAST)

001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT

Arabidopsis Description

RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.