Factsheet for Solyc04g039840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030760.1	Barley	cytosol, mitochondrion	21.88	36.84
Os05t0427800-00	Rice	cytosol, mitochondrion, plastid	82.81	35.81
Solyc12g062540.1.1	Tomato	cytosol	60.94	26.9
OQU83888	Sorghum	cytosol	70.31	20.83
Solyc01g007330.2.1	Tomato	plastid	84.38	11.32
Solyc07g021190.1.1	Tomato	cytosol	12.5	7.02
Solyc02g077860.1.1	Tomato	cytosol, extracellular	0.0	0.0
VIT_12s0055g00520.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	0.0	0.0
Solyc12g062560.1.1	Tomato	plastid	0.0	0.0
Solyc12g062550.1.1	Tomato	plastid	0.0	0.0
Solyc12g062420.1.1	Tomato	cytosol	0.0	0.0
Solyc10g047430.1.1	Tomato	cytosol	0.0	0.0
Solyc07g021200.1.1	Tomato	plastid	0.0	0.0
CDY10606	Canola	cytosol	0.0	0.0
OQU80110	Sorghum	extracellular, vacuole	0.0	0.0
KRH24770	Soybean	extracellular, plastid	0.0	0.0
HORVU2Hr1G084620.1	Barley	cytosol, mitochondrion, plastid	0.0	0.0
GSMUA_AchrUn_...	Banana	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc04g039840.1.1	EnsemblPlantsGene:Solyc04g039840.1	Gene3D:3.30.70.150	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0015977	GO:GO:0016984	InterPro:IPR036422	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N
KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	PFAM:PF02788	SUPFAM:SSF54966
UniParc:UPI0002766010	UniProt:K4BRC2	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4:+:12525508..12525756

Molecular Weight (calculated)

6842.0 Da

IEP (calculated)

4.803

GRAVY (calculated)

-0.280

Length

64 amino acids

Sequence
(BLAST)

1: MSPQTEPKAS IGFKDTDILV AFRVTPQPGV PPEKAGATVA AESYIGTWTS VWTDGLTSLD RYKG

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.