CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	vacuole

plastid: 20443193
extracellular: 22945350

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10606	Canola	cytosol	20.42	45.31
GSMUA_AchrUn_...	Banana	plastid	17.61	25.77
OQU83888	Sorghum	cytosol	0.7	0.46
HORVU0Hr1G030760.1	Barley	cytosol, mitochondrion	0.0	0.0
HORVU2Hr1G084620.1	Barley	cytosol, mitochondrion, plastid	0.0	0.0
OQU80110	Sorghum	extracellular, vacuole	0.0	0.0
Os05t0427800-00	Rice	cytosol, mitochondrion, plastid	0.0	0.0
Solyc04g039840.1.1	Tomato	cytosol	0.0	0.0
Solyc10g047430.1.1	Tomato	cytosol	0.0	0.0
VIT_12s0055g00520.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.20.20.110	MapMan:35.1	UniProt:A0A0R0H8T4	EMBL:ACUP02007185
EnsemblPlantsGene:GLYMA_12G061600	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987
GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036376	EnsemblPlants:KRH24770	ProteinID:KRH24770	ProteinID:KRH24770.1
PFAM:PF00016	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO_lsu_C
InterPro:RuBisCO_lsu_C_sf	SUPFAM:SSF51649	TMHMM:TMhelix	UniParc:UPI0006ED6274	:	:

Description

hypothetical protein

Coordinates

chr12:-:4499104..4499532

Molecular Weight (calculated)

15824.9 Da

IEP (calculated)

5.993

GRAVY (calculated)

-0.115

Length

142 amino acids

Sequence
(BLAST)

001: SKHEGKREIT LGFLDLLRDD FVEKDRSCGI YFTQDWISLP GVLCVVFGGI HVWHMPAQTK IFGDDSVLQF GRGTLGHLWG NAPGAVANRV ALEAYVQARN
101: EGHLACEGNE IISETSKWSP KLAAACEVWK KIKFDFEAMD TL

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.